BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0008.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase [Herba...   442   e-125
gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA synthe...    77   2e-15

>gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  442 bits (1136), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 203/222 (91%), Positives = 217/222 (97%)

Query: 1   VVAEMLLQGTAYHCYSSPEEVEAMRERQRAAGEKPRYDGTWRPERGKTLPAIPEGRKPVV 60
           V+A+ML QGTAY+CY +PEEVEAMRERQRAAGEKPRYDGTWRPE GKTLPAIPEGRKPVV
Sbjct: 104 VIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPRYDGTWRPEPGKTLPAIPEGRKPVV 163

Query: 61  RFRNPLDGDVTWDDVVKGPITISNRELDDLVIARPDGTPTYNFCVVVDDWDMKITHVIRG 120
           RF+NP DG+V+W+DVVKGPITISNRELDDLVIARPDGTPTYNFCVVVDDWDMKITHVIRG
Sbjct: 164 RFKNPQDGEVSWNDVVKGPITISNRELDDLVIARPDGTPTYNFCVVVDDWDMKITHVIRG 223

Query: 121 DDHVNNTPRQINILKALGGTLPQYGHVPMILGADGEKLSKRHGAVSVMDYPAQGFLPEAM 180
           DDHVNNTPRQINILKALGGTLP+YGHVPMILGADGEKLSKRHGAVSVMDYPAQG+LPEAM
Sbjct: 224 DDHVNNTPRQINILKALGGTLPEYGHVPMILGADGEKLSKRHGAVSVMDYPAQGYLPEAM 283

Query: 181 LNYLARLGWSHGDEEIFSMEQFCGWFDLDHLSKSPAQFNPEK 222
           LNYLARLGWSHGD+EIFSM+QFC WFDLDHL+K+PAQFNPEK
Sbjct: 284 LNYLARLGWSHGDDEIFSMQQFCAWFDLDHLTKAPAQFNPEK 325


>gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 95/208 (45%), Gaps = 21/208 (10%)

Query: 7   LQGTAYHCYSSPEEVEAMRERQRAAGEKPRYDGTWRPERGKTLPAIPEGRKPVVRFRNPL 66
           L   AY C  S +E+   R    + G    Y GT R          P  +   +R R P 
Sbjct: 92  LGALAYPCGCSRKEIADSRVGTASDGAA-LYPGTCRHGLA------PGKQARTLRLRVPD 144

Query: 67  DGD----VTWDDVVKGPITIS-NRELDDLVIARPDGTPTYNFCVVVDDWDMKITHVIRGD 121
            G     V ++D   GP       E+ D V+ R DG   Y   VVVDD +  +T ++RG 
Sbjct: 145 PGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRADGFWAYQLAVVVDDAEQGVTDIVRGA 204

Query: 122 DHVNNTPRQINILKALGGTLPQYGHVPMILGADGEKLSKRHGAVSV-MDYPAQGFLPEAM 180
           D +++T RQI +   LG   P+Y HVP+++   GEK SK++GA ++ ++ P Q     A+
Sbjct: 205 DLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGEKFSKQNGAQALDLNQPLQ-----AL 259

Query: 181 LNYLARLGWSHG---DEEIFSMEQFCGW 205
               A LG   G   D E F      GW
Sbjct: 260 QQAAAFLGLDTGAARDREGFWALALTGW 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 890,334
Number of extensions: 40387
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)