BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0007.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312380|ref|YP_003776472.1| enoyl-CoA hydratase/carnithine ...   149   1e-37
gi|300313068|ref|YP_003777160.1| enoyl-CoA hydratase [Herbaspiri...    55   3e-09
gi|300310158|ref|YP_003774250.1| enoyl-CoA hydratase [Herbaspiri...    54   5e-09

>gi|300312380|ref|YP_003776472.1| enoyl-CoA hydratase/carnithine
           racemase [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  149 bits (376), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 83/101 (82%)

Query: 1   LIAHLIDLIAQARDNPQVKVLVLASTGKSFSAGADLGWMRRMADATREDNIKDAHQLAAL 60
           LIAHLIDL+ QARD+ +  +L+LASTGKSFSAGADL WMRRMADA+REDN++DA +LA L
Sbjct: 32  LIAHLIDLLTQARDDTRTCLLLLASTGKSFSAGADLAWMRRMADASREDNLRDARKLALL 91

Query: 61  MENLNNFPCPTVARIQGTVMGGGVGLVACCDVPPXPPRGLF 101
           ME LN+FP PT+A++QG VMGGGVGLV+CCD+        F
Sbjct: 92  METLNSFPTPTLAKVQGAVMGGGVGLVSCCDIVVASDAAFF 132


>gi|300313068|ref|YP_003777160.1| enoyl-CoA hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 13  RDNPQVKVLVLASTGKSFSAGADLGWMRRMADATREDNIKDAHQLAALMENLNNFPCPTV 72
           + +  V+ ++LA+ GK+F AG DL  M+     T  + +   H+ + LM++L   P P +
Sbjct: 47  KSDSTVRCVILAANGKAFCAGHDLRQMQATPQQTYYEAL--FHRCSHLMQSLRELPVPVI 104

Query: 73  ARIQGTVMGGGVGLVACCDVPPXPPRGLFRAVG 105
           A++QG     G  LVA CD+        F   G
Sbjct: 105 AKVQGLATAAGCQLVATCDLAIAAESARFAVSG 137


>gi|300310158|ref|YP_003774250.1| enoyl-CoA hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score = 53.9 bits (128), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 15  NPQVKVLVLASTGKSFSAGADLGWMRRMADATREDNIKDAHQLAALMENLNNFPCPTVAR 74
           +P+V+ +VLA+ G+SFS G ++ W+R  ADA     + D  +LA L++ L     PTVAR
Sbjct: 55  DPEVRAIVLAARGESFSHGIEVQWLRAQADAPINGALDDTRKLAQLLQVLAECEKPTVAR 114

Query: 75  IQ 76
           +Q
Sbjct: 115 VQ 116


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 442,813
Number of extensions: 17363
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)