BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0001.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar ep...   333   7e-93
gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbas...   104   6e-24

>gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  333 bits (853), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 160/178 (89%), Positives = 171/178 (96%)

Query: 1   MKINFDATRLILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALLMPQSSYGAQKVMG 60
           MKINFDATR+ILERARALG+KPRVVFTSSVAVFGG+LPA VPDN LLMPQSSYGAQKVMG
Sbjct: 98  MKINFDATRVILERARALGSKPRVVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMG 157

Query: 61  ELLVNDYSRKGFIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNGQPSVCPVAPETR 120
           ELLV DYSRKGFIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNGQPSVCPV P+TR
Sbjct: 158 ELLVQDYSRKGFIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTR 217

Query: 121 MWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALEQVAGADVVKLI 178
           MWLMSPR+AI NLIHGHEINGADLGLARFLSIDGL V+V++MV+ALEQVAG +VV+LI
Sbjct: 218 MWLMSPRQAIANLIHGHEINGADLGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLI 275


>gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  104 bits (259), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 9/204 (4%)

Query: 2   KINFDATRLILE---RARALGTKPRVVFTSSVAVFGGDLPAQVPDNALLMPQSSYGAQKV 58
           ++N DAT  + E   R       P VV+ S++AV+G DLP  V       P   YGA K+
Sbjct: 92  RVNLDATLDLFELLARRDPATPPPVVVYASTIAVYGLDLPDPVTPATPPRPALIYGAHKL 151

Query: 59  MGELLVNDYSRKGFIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNGQPSVCPVAPE 118
             E+L+ DY+R+G +DGR+LR+P I  RP A +   S+F S ++     G+   CPV P+
Sbjct: 152 ACEILLADYTRRGLLDGRSLRLPGIVARPRAASGLVSAFMSELLHALAAGELFTCPVGPQ 211

Query: 119 TRMWLMSPRKAIDNLIHGHEIN---GADLGLARFLSIDGLSVSVRQMVDALEQVAGADVV 175
              W MS ++  +NL+H   ++     +   AR   +  L +S+ Q+V  L  + G D  
Sbjct: 212 ATAWWMSAQRCAENLLHAASMDPTRDPEGAAARVWPLPVLRLSIAQVVATLSALYGVDGQ 271

Query: 176 KLIXTLRALSGAMVEQSISRVPGL 199
            L+   R      VE    R P L
Sbjct: 272 ALV---RYAPQPQVEAVFGRYPRL 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 660,415
Number of extensions: 27408
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)