BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0079.0003.p (381 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751... 138 6e-34 gi|300310490|ref|YP_003774582.1| major facilitator superfamily p... 134 1e-32 gi|300310476|ref|YP_003774568.1| major facilitator superfamily t... 121 7e-29 >gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751 [Herbaspirillum seropedicae SmR1] Length = 448 Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 97/145 (66%), Gaps = 3/145 (2%) Query: 81 TIYGATFWXEIARDQEAEAYPYLREKIEEAAETVFFSRNERSYEVNAFVIPMFVRTVGGL 140 T+Y A E R + + +LRE +EE+A+ V R E+ E+NAF+IPM VRT GGL Sbjct: 116 TLYEAL---EQLRYDDVRGHGFLREVVEESADIVVLRRGEKEMEINAFLIPMLVRTRGGL 172 Query: 141 DAEQNFRDADAFTELTASIKEAQLESADAKVVLVSYAYHLDEIDAITYSHLEAMVRDAYA 200 EQ D +AF L S+++A LES A+VVLV + YH +EI+A+++ +EAM RDA+A Sbjct: 173 REEQALADGEAFDALRESLQQAGLESPKARVVLVHHLYHPEEINALSFGEVEAMNRDAFA 232 Query: 201 AMTDKKLTSTPAIDRSMSNWPANRF 225 ++TDKK+ S PAI+RSM WPA F Sbjct: 233 SLTDKKVMSVPAIERSMRGWPATTF 257 >gi|300310490|ref|YP_003774582.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 447 Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 59/88 (67%), Positives = 74/88 (84%) Query: 1 MFIIEGLASVLLCFVVWRRLDSTPQDARWLSDDERHSLTTIIAHEQRERQASKPVHVSSW 60 MFIIEG AS++ C VVW LDSTP++A+WLS ++R +L +IA EQ +R A++P HVS+ Sbjct: 185 MFIIEGGASMVFCVVVWLVLDSTPREAKWLSQEQREALAAVIAAEQEQRAANRPAHVSAL 244 Query: 61 SLLKDPQILLFCFIYFAIQLTIYGATFW 88 SLL+DPQI+LFCFIYFAIQLTIYGATFW Sbjct: 245 SLLRDPQIVLFCFIYFAIQLTIYGATFW 272 >gi|300310476|ref|YP_003774568.1| major facilitator superfamily transporter protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 121 bits (304), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 56/88 (63%), Positives = 65/88 (73%) Query: 1 MFIIEGLASVLLCFVVWRRLDSTPQDARWLSDDERHSLTTIIAHEQRERQASKPVHVSSW 60 MFIIEG+ASVLLC VW LDS P DA+WL+ ER ++T I EQ ER +P VS Sbjct: 197 MFIIEGMASVLLCGFVWFWLDSMPADAKWLTAQERSAITRAIVDEQAERMKHQPAQVSPR 256 Query: 61 SLLKDPQILLFCFIYFAIQLTIYGATFW 88 LL+DPQIL+FCFIYF+I LTIYGATFW Sbjct: 257 QLLRDPQILIFCFIYFSISLTIYGATFW 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,024,673 Number of extensions: 36615 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 4 Length of query: 381 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 294 Effective length of database: 1,207,925 Effective search space: 355129950 Effective search space used: 355129950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)