BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0078.0002.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   266   8e-73
gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   229   1e-61

>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
            oxidoreductase subunit alpha/beta [Herbaspirillum
            seropedicae SmR1]
          Length = 1180

 Score =  266 bits (681), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 139/214 (64%), Positives = 170/214 (79%), Gaps = 1/214 (0%)

Query: 1    VVIRMPETLDKLIKRRVAFLTDYQDAAYAESFAGFVEQVRAKEAALNLGDKLTMAVARNL 60
            V++ +P++LD+LIKRRV+ LTDYQDAAYA  F   VE VRA EAAL   DKL  AVARNL
Sbjct: 957  VLLHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALG-SDKLATAVARNL 1015

Query: 61   SKLMAYKDEYEVARLYTDGRFVEQLKQQFEGDFSLSFNLAPPLFSKKDAQGRLVKAKYGS 120
            S+LMAYKDEYEVARLYT+G+F ++L QQFEGDFSLSF+LAPPL ++KD QG L+KA+YG 
Sbjct: 1016 SRLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKARYGG 1075

Query: 121  WMMSAFKLLAKFKGLRGGAFDVFGYTAERKTERSLIAEYRATVSTLLDGLNADKLALAVE 180
            W+M AFKLLA+ KGLRGG  D+FG+T ER+ ER LI +YR  V  LL  L A  LA A+E
Sbjct: 1076 WVMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIE 1135

Query: 181  IAQLPEQIRGYGHVKDKALVQVRGKQDELLAQYA 214
            +AQLPEQ+RGYGHVK KA+  +R +Q +LLA +A
Sbjct: 1136 LAQLPEQVRGYGHVKLKAVHAMRTRQQQLLAVFA 1169


>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
            oxidoreductase subunit alpha/beta [Herbaspirillum
            seropedicae SmR1]
          Length = 1199

 Score =  229 bits (585), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 152/218 (69%), Gaps = 4/218 (1%)

Query: 4    RMPETLDKLIKRRVAFLTDYQDAAYAESFAGFVEQVRAKEAALN---LGDKLTMAVARNL 60
            R P TLD+L++RRVAFLTDY +AAYA S+  FVEQVRA+E+AL     G KL+ AVA  L
Sbjct: 968  RTP-TLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSRAVASYL 1026

Query: 61   SKLMAYKDEYEVARLYTDGRFVEQLKQQFEGDFSLSFNLAPPLFSKKDAQGRLVKAKYGS 120
             KLMAYKDEYEVARL+ D  F  ++   FEGD+ L F+LAPPL +K+D +G L K  +GS
Sbjct: 1027 FKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLRKQAFGS 1086

Query: 121  WMMSAFKLLAKFKGLRGGAFDVFGYTAERKTERSLIAEYRATVSTLLDGLNADKLALAVE 180
            WMM  F +LA+ + LRG A D F YT ER+ ER+LI EYRAT+S LLD L  + L     
Sbjct: 1087 WMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPENLEQITA 1146

Query: 181  IAQLPEQIRGYGHVKDKALVQVRGKQDELLAQYAAVAA 218
            +A++PE+IRGYGHVK++ L     KQ  LLAQ    AA
Sbjct: 1147 VARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQAAA 1184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,085
Number of extensions: 24864
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)