BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0077.0010.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D...    66   1e-12
gi|300312760|ref|YP_003776852.1| transcription regulator protein...    56   1e-09
gi|300311006|ref|YP_003775098.1| transcription regulator protein...    54   5e-09

>gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory
           DNA-binding transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 65.9 bits (159), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 2   IDHIDKKLIQLLAADARASLKALAQASGLSAPSVTERLKRLEERGVLTAYTIDIDTYALG 61
           +D +D +++ +L  D R S+K L +  GLS     ER++R+E  GV+T Y   ++  +LG
Sbjct: 11  LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70

Query: 62  YQIQAIVRI---RPLPGQLHTVERQILATPEFTECDKVTGEDCYIARLLVRTLPE----L 114
             +   V I              R++L  PE  EC  V+G+  Y+ +  +R + E    L
Sbjct: 71  ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130

Query: 115 DLVLDRFAASAQTNTAIV 132
             +L +   +AQ+ + +V
Sbjct: 131 GDILLQLPGAAQSKSYVV 148


>gi|300312760|ref|YP_003776852.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 2   IDHIDKKLIQLLAADARASLKALAQASGLSAPSVTERLKRLEERGVLTAYTIDIDTYALG 61
           +D +D+KL+ +L  D + S + LA+   +S P+   R++ L E G+++A    +D +ALG
Sbjct: 8   LDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDPFALG 67

Query: 62  YQIQAIVRIRPLPGQ----LHTVERQILATPEFTECDKVTGEDCYI 103
           Y + A + I  L  Q    +   E+++    E  +C  V+GE  Y 
Sbjct: 68  YGMLAFLEI-SLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYF 112


>gi|300311006|ref|YP_003775098.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 53.9 bits (128), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 2   IDHIDKKLIQLLAADARASLKALAQASGLSAPSVTERLKRLEERGVLTAYTIDIDTYALG 61
           +D  D  L+  L  D   +  AL Q   LS   ++ R++RLEE  V+  YT  +D   +G
Sbjct: 6   VDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65

Query: 62  YQIQAIVRI---RPLPGQLHTVERQILATPEFTECDKVTGEDCYIARLL 107
             + A   +   R    +    E+ +   PE TEC  VTGE  YI R++
Sbjct: 66  LGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIV 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 407,075
Number of extensions: 14879
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)