BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0077.0006.p (570 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC trans... 132 7e-32 gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC trans... 128 1e-30 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 65 1e-11 >gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 427 Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 10/225 (4%) Query: 25 ILQTGIVNADGH--ATLDQFRRMTSDL--------VFAKVLGNTFLISGLTALLSVLLGF 74 I Q G V + + A+LD + + D+ ++ + G T +S + +++LL + Sbjct: 170 IAQNGSVYSPYYLLASLDLRQNVFGDIEAAPPESAIYRTIFGRTLWMSAVVTCITLLLAY 229 Query: 75 PVAYFLSQLSDRFRERWMIWIMVPFWTSYLVKTFAWILVLSKTGILLTLAASLGLVDDPN 134 P+AY+LS + +R MI +++PFWTS LV+ AWI++L G++ GL P Sbjct: 230 PLAYWLSTMPERRANLLMILVLIPFWTSILVRVAAWIVLLQSEGLVNKALMLAGLTQSPL 289 Query: 135 ALAPSMTGVMIGMVHAMLPLAVINMLPIMRGVNAQLLQAAETLGANRSVAFFSVFLPMAA 194 L + GV I M H +LP ++ + +M+ V A L+AA +LG++ AF+ V++P Sbjct: 290 ELVFNRVGVYISMTHILLPFMILPLYSVMKSVPATYLKAAVSLGSHPFAAFWRVYVPQTY 349 Query: 195 PGIAAAGLLVFITSLGFFILPALLGTPKETMVAQMVISAINDLFN 239 PGI A LLVFI + G++I PALLG P E MV+ + IN N Sbjct: 350 PGIGAGVLLVFIMAGGYYITPALLGGPNEQMVSYFIAYFINTTIN 394 >gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 136/227 (59%) Query: 328 PIIVVFPIAFTNSPFLSFPPQGFSLRWFESFIFSPVWQASFLRSFGVAIVTALASTALGI 387 PI+V+ P++F++S FL +P + FSLRW+E+ S W + SF VA + +T LG Sbjct: 36 PILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRAAQNSFIVAPAATVIATVLGT 95 Query: 388 GAALALTRLPPRWTKPVFAFLLAPLIVPRIVVAVGLFYLFSRMGLVGTDLGLTIGHTVLA 447 AA+ L + R + A L++P+IVP +VV VG++ F+R+GL + LGL + H L Sbjct: 96 LAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIGLSDSYLGLILAHAALG 155 Query: 448 IPYVVVTMAAALKRFDWRLDDAARILGASAFARLRTIQLPMMIGSVAAALQMAFIISFDE 507 P+VV T+ A L+ F+ L A+ LGAS + LP++ + + AF SFDE Sbjct: 156 APFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVIAPGLISGALFAFATSFDE 215 Query: 508 LTIAIFVSGGMKNTLPKQMWDDMILQVNPTLAAVSLVMVIVIALLIL 554 + + +FV+G + TLP+QM+ + ++PT+AA++ +++I L+L Sbjct: 216 VVLTLFVAGPEQATLPRQMFAGIKDNISPTIAALATILIIFSTCLLL 262 Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%) Query: 147 MVHAML--PLAVINMLPIMRGVNAQLLQAAETLGANRSVAFFSVFLPMAAPGIAAAGLLV 204 + HA L P V +L ++G N L++A+ +LGA+ FF V LP+ APG+ + L Sbjct: 149 LAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVIAPGLISGALFA 208 Query: 205 FITSLGFFILPALLGTPKETMVAQMVISAINDLFNLPYAAALSTVLLIFAVAVFILYDKL 264 F TS +L + P++ + + + + I D + P AAL+T+L+IF+ + L Sbjct: 209 FATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNIS-PTIAALATILIIFSTCL------L 261 Query: 265 VGLSSLSGDTRAAPR 279 + L L G +AA R Sbjct: 262 LALEWLRGRNKAAAR 276 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 18/221 (8%) Query: 362 PVWQASFLRSFGVAIVTALASTALGIGAALALTRLPPRWTKPVFAFLLAPLIVPRIVVAV 421 PVW L S VA + L + LG+ AA L+R + + L PL++P V+ Sbjct: 3 PVW-TPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGY 61 Query: 422 GLFYLFSRMGLVGTDL------------GLTIGHTVLAIPYVVVTMAAALKRFDWRLDDA 469 L LF R G +G L G + TV+A P V+ + AA + D +++DA Sbjct: 62 YLLVLFGRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDA 121 Query: 470 ARILGASAFARLRTIQLPMMIGSVAAALQMAFIISFDELTIAIFVSG---GMKNTLPKQM 526 AR+LG S + LP+ + + A + +AF + E + V+G G TL + Sbjct: 122 ARVLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAI 181 Query: 527 WDDMILQVNPTLAAVSLVMVIVIALLILLPAFYKMARRRAH 567 ++ +Q +A LV++ I ++LL ++ RA Sbjct: 182 YE--AVQAGDDGSATLLVVITSITCIVLLMVAGRLTPDRAQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,628,126 Number of extensions: 65018 Number of successful extensions: 449 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 445 Number of HSP's successfully gapped: 20 Length of query: 570 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 480 Effective length of database: 1,193,720 Effective search space: 572985600 Effective search space used: 572985600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 133 (55.8 bits)