BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0077.0005.p (287 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 276 1e-75 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 245 3e-66 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 232 3e-62 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 231 5e-62 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 231 7e-62 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 276 bits (707), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 129/243 (53%), Positives = 174/243 (71%), Gaps = 1/243 (0%) Query: 5 LQTRAISKHYDSVTALSPT-DLDVRDGEFLTLLGPSGSGKTTLLQILAGLVEPSGGSLFI 63 +Q + K YD + DLD+R GEFLTLLGPSGSGKTT L +LAG P+GG + + Sbjct: 22 VQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 81 Query: 64 NGKDATHTAAGERGIGMVFQSYALFPHLSVWENIAYPLRMRRMDKAAMAAAVRDALEMVQ 123 +G+ +R IGMVFQ+YALFPH+++ +N+AYPL +R+MD+A A V+ AL+MVQ Sbjct: 82 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 141 Query: 124 MGSYANRLPRELSGGQQQRIALARCFVYKPSVILLDEPLGALDKKLREHMQSEIRSLHKD 183 MG + +R P +LSGGQQQR+ALAR V+ P ++L+DEPLGALDK+LREHMQ E+++LHK Sbjct: 142 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 201 Query: 184 LGATFIYVTHDQEEALNLSDRICLMNQSKIEQIGTPQDLYDRPATAFSAQFIGYSNLLSG 243 LG TF+YVTHDQ EAL +SDR+ + +Q I+Q+ +LY+ P F A FIG +N G Sbjct: 202 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKG 261 Query: 244 RVQ 246 V+ Sbjct: 262 SVE 264 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 245 bits (626), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/262 (46%), Positives = 174/262 (66%), Gaps = 6/262 (2%) Query: 5 LQTRAISKHYDSVTALSPTDLDVRDGEFLTLLGPSGSGKTTLLQILAGLVEPSGGSLFIN 64 ++ I K + S TAL+ L+ GE LLGPSG GKTTLL+I+AGL P G + ++ Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 65 GKDATHTAAGERGIGMVFQSYALFPHLSVWENIAYPLRMR----RMDKAAMAAAVRDALE 120 G+DA+ ER +G VFQ YALF H++V+ENIA+ LR++ R +A + V+ LE Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLE 122 Query: 121 MVQMGSYANRLPRELSGGQQQRIALARCFVYKPSVILLDEPLGALDKKLREHMQSEIRSL 180 +VQ+ A+R P +LSGGQ+QRIALAR +P V+LLDEP GALD K+R+ ++ +R L Sbjct: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 181 HKDLGATFIYVTHDQEEALNLSDRICLMNQSKIEQIGTPQDLYDRPATAFSAQFIGYSNL 240 H +L T I+VTHDQEEAL ++D++ LMN+ ++EQIGTP+ +Y+ PA+ F F+G NL Sbjct: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVNL 242 Query: 241 LSGRVQDSGAGARLGNGRFDVP 262 GR+ + A G RF+ P Sbjct: 243 FHGRLHEGVLDA--GGARFEAP 262 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 232 bits (591), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/261 (45%), Positives = 164/261 (62%), Gaps = 6/261 (2%) Query: 3 ARLQTRAISKHYDS-VTALSPTDLDVRDGEFLTLLGPSGSGKTTLLQILAGLVEPSGGSL 61 A + + + K YD L+ +LD+RDGEF L+GPSG GK+TLL++L GL E SGG L Sbjct: 2 AHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGEL 61 Query: 62 FINGKDATHTAAGERGIGMVFQSYALFPHLSVWENIAYPLRMRRMDKAAMAAAVRDALEM 121 I G+ H ERGI MVFQSYAL+PH++V++N+A+ L++ K+ + A +R A + Sbjct: 62 AIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAI 121 Query: 122 VQMGSYANRLPRELSGGQQQRIALARCFVYKPSVILLDEPLGALDKKLREHMQSEIRSLH 181 +++ RLPRELSGGQ+QR+A+ R V +P + L DEPL LD LR + EI LH Sbjct: 122 LKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLH 181 Query: 182 KDLGATFIYVTHDQEEALNLSDRICLMNQSKIEQIGTPQDLYDRPATAFSAQFIGYS--N 239 + L AT +YVTHDQ EA+ L D+I +M++ +I+Q GTP +LY +P F A FIG N Sbjct: 182 RQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKMN 241 Query: 240 LLSG---RVQDSGAGARLGNG 257 G R DSG + G Sbjct: 242 FFQGVVTRCDDSGVQVEIAGG 262 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 231 bits (589), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 121/278 (43%), Positives = 170/278 (61%), Gaps = 10/278 (3%) Query: 3 ARLQTRAISKHYDSVTALSPTDLDVRDGEFLTLLGPSGSGKTTLLQILAGLVEPSGGSLF 62 A + R ++K YD + +L++ DGEF+ +GPSG GK+TLL+++AGL E S G L Sbjct: 2 AAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLD 61 Query: 63 INGKDATHTAAGERGIGMVFQSYALFPHLSVWENIAYPLRMRRMDKAAMAAAVRDALEMV 122 I + A +RG+ MVFQSYAL+PH+S+++N+A+ L++ KA + AAV+ A +++ Sbjct: 62 IGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKIL 121 Query: 123 QMGSYANRLPRELSGGQQQRIALARCFVYKPSVILLDEPLGALDKKLREHMQSEIRSLHK 182 + +R PR LSGGQ+QR+A+ R +PSV L DEPL LD LR M+ E LH Sbjct: 122 HIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHD 181 Query: 183 DLGATFIYVTHDQEEALNLSDRICLMNQSKIEQIGTPQDLYDRPATAFSAQFIGYS--NL 240 DL T IYVTHDQ EA+ L+D+I ++++ +IEQ+G+PQ LY PA F A FIG N Sbjct: 182 DLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNF 241 Query: 241 LSGRVQDSGAGARLGNGRFDVPLPGXAKRLQWATASAS 278 + G V A + V LPG LQWA S Sbjct: 242 IDGTV------AAIQADGVQVQLPGGG--LQWAAVDGS 271 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 231 bits (588), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 129/258 (50%), Positives = 166/258 (64%), Gaps = 5/258 (1%) Query: 19 ALSPTDLDVRDGEFLTLLGPSGSGKTTLLQILAGLVEP-SGGSLFINGKDATHTAAGERG 77 AL P DL + GE L LLGPSG GKTT L+++AGL P GG + +D T +RG Sbjct: 25 ALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGRVLFGEEDVTMLPIEKRG 84 Query: 78 IGMVFQSYALFPHLSVWENIAYPLRMRRMDKAAMAAAVRDALEMVQMGSYANRLPRELSG 137 +GMVFQ+YALFP++SV ENIAY +++R++ A V LEMV + ++R +LSG Sbjct: 85 VGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGLSHRRVDQLSG 144 Query: 138 GQQQRIALARCFVYKPSVILLDEPLGALDKKLREHMQSEIRSLHKDLGATFIYVTHDQEE 197 GQ+QR+ALAR +P V+LLDEPL ALD KLRE ++S++ L + LG T IYVTHDQ E Sbjct: 145 GQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGE 204 Query: 198 ALNLSDRICLMNQSKIEQIGTPQDLYDRPATAFSAQFIGYSNLLSGRVQDSGAGARLGNG 257 A+ L DRI +M + KI QIGTPQ++Y PA F A+FIG N + G V AG RL Sbjct: 205 AMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGIV----AGDRLQLP 260 Query: 258 RFDVPLPGXAKRLQWATA 275 +PLP A Q A A Sbjct: 261 TGTLPLPPDAVAGQPAQA 278 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 879,920 Number of extensions: 36913 Number of successful extensions: 573 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 344 Number of HSP's successfully gapped: 148 Length of query: 287 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 203 Effective length of database: 1,222,130 Effective search space: 248092390 Effective search space used: 248092390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)