BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0077.0002.p (136 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313109|ref|YP_003777201.1| short-chain alcohol dehydrogena... 60 6e-11 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 58 3e-10 gi|300312738|ref|YP_003776830.1| short chain dehydrogenase [Herb... 57 4e-10 gi|300310374|ref|YP_003774466.1| dehydrogenase oxidoreductase [H... 57 5e-10 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 56 1e-09 >gi|300313109|ref|YP_003777201.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 266 Score = 60.1 bits (144), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 1 VLVNSAGHGPKGKVLELSDEEWLLGMEIYLMNVVRSARLVTPLMQQQGGGAIINISSFSA 60 VL N+ G G +E S+E W + + ++ + + V P+M++Q GAI+NISS +A Sbjct: 92 VLHNNVGIADVGGPVETSEESWNRLVAVNQTSLFLTHKHVLPIMEKQRKGAIVNISSLAA 151 Query: 61 VEPSQSFP--TSSVFRAGLSAYTKLFADKYAPENIRMNNILPGFIDS 105 + FP + +A + A+TK A +YAP IR N +LPG +D+ Sbjct: 152 LRWI-GFPYLGYTATKAAILAFTKNVAMQYAPMGIRANCVLPGMMDT 197 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 57.8 bits (138), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 1 VLVNSAGHGPKGKVLELSDEEWLLGMEIYLMNVVRSARLVTPLMQQQGGGAIINISSFSA 60 +LVN+AG K+LE++ +++ +++ L + ++ V P MQ Q G+I+ ISS SA Sbjct: 84 ILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLYMSQAVLPAMQAQQSGSIVCISSVSA 143 Query: 61 VEPSQSF--PTSSVFRAGLSAYTKLFADKYAPENIRMNNILPGFIDS 105 P S +AG+ + A ++ P+ IR+N I PG I + Sbjct: 144 QRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLIST 190 >gi|300312738|ref|YP_003776830.1| short chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 57.4 bits (137), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 1/105 (0%) Query: 1 VLVNSAG-HGPKGKVLELSDEEWLLGMEIYLMNVVRSARLVTPLMQQQGGGAIINISSFS 59 VL+N+AG GP V E++ +W + + L R PL+++ GGGAI+NISS + Sbjct: 86 VLINNAGIAGPTSPVEEVALSDWDQTLAVNLTGPFLCTRRAVPLLKKNGGGAIVNISSVA 145 Query: 60 AVEPSQSFPTSSVFRAGLSAYTKLFADKYAPENIRMNNILPGFID 104 S + G+ T+ +A + P +IR+N +LPG ++ Sbjct: 146 GRLGFALRTPYSASKYGVIGLTETWAIELGPSHIRVNAVLPGIVE 190 >gi|300310374|ref|YP_003774466.1| dehydrogenase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 57.0 bits (136), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 1 VLVNSAGHGPKGKVLELSDEEWLLGMEIYLMNVVRSARLVTPLMQQQGGGAIINISSFSA 60 VLVN+A + + K+ E++ E W + I + + V M+++GGG+IIN SS S Sbjct: 99 VLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAVQSVVEGMKRRGGGSIINFSSISW 158 Query: 61 VEPSQSFPTSSVFRAGLSAYTKLFADKYAPENIRMNNILPGFIDS-------LPEKPGKX 113 + FP + +A T+ A P IR+N + PG++ + L E+ K Sbjct: 159 HQSGGGFPVYTTAKASTLGLTRGLARDLGPHKIRVNTVTPGWVMTERQIKLWLDEEGKKA 218 Query: 114 IAR 116 IAR Sbjct: 219 IAR 221 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Query: 1 VLVNSAGHGPKGKVLELSDEEWLLGMEIYLMNVVRSARLVTPLMQQQGGGAIINISSFSA 60 +LVN+AG K LE++ ++ +++ L + ++ V P M+ Q G+II ISS SA Sbjct: 84 ILVNNAGITQPVKTLEITGADYDRILDVSLRGTLYMSQAVLPAMRAQQNGSIICISSVSA 143 Query: 61 VEPSQSF--PTSSVFRAGLSAYTKLFADKYAPENIRMNNILPGFIDS 105 P S +AG+ + A ++ PE IR+N+I PG I + Sbjct: 144 QRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSITPGLIGT 190 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 425,447 Number of extensions: 15050 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 7 Length of query: 136 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 60 Effective length of database: 1,260,010 Effective search space: 75600600 Effective search space used: 75600600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)