BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0076.0010.p (108 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 185 8e-49 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 72 1e-14 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 69 8e-14 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 66 6e-13 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 64 2e-12 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 185 bits (469), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 88/102 (86%), Positives = 93/102 (91%) Query: 1 MKLATGLKRPTRGSIAIAGADVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRS 60 MKLATGLK+P RGS+ I G VTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYR Sbjct: 50 MKLATGLKQPNRGSVVIDGQTVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRR 109 Query: 61 DFKKNKAQYAERALKLLKTVGLDGYADKFPWELSGGMQQRAS 102 DFK+ KA+Y ERAL LLKTVGLDGYADKFPW+LSGGMQQRAS Sbjct: 110 DFKQKKAEYTERALSLLKTVGLDGYADKFPWQLSGGMQQRAS 151 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 7/107 (6%) Query: 1 MKLATGLKRPTRGSIAIAGADVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRS 60 + + GL +P+ GS+ + G ++ G + G FQA L+PWR+ L NV+ L+ YR Sbjct: 54 LNVGAGLLQPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQ----YRG 109 Query: 61 DFKKNKAQYAERALKLLKTVGLDGYADKFPWELSGGMQQRASXKNLL 107 +K A+ E + L VGL G+ D++P +LSGGM++R + L Sbjct: 110 HEEKAAAELGE---QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTL 153 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 68.9 bits (167), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 7/90 (7%) Query: 11 TRGSIAIAGADVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRSDFKKNKAQYA 70 + G I++ G V+GP G+ FQ +LLPW++ DNV L L+ +SD + Sbjct: 59 SEGRISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSR------- 111 Query: 71 ERALKLLKTVGLDGYADKFPWELSGGMQQR 100 ERA +LL+ VGL +A P+ELSGGM+QR Sbjct: 112 ERAQELLRLVGLQDFARAAPYELSGGMRQR 141 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 66.2 bits (160), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 10/110 (9%) Query: 1 MKLATGLKRPTRGSIAIAG---ADVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEP 57 +K+ GL+ P+ G I G A V P + + M FQ TL+PW T NV LPL++ Sbjct: 63 LKMFAGLEEPSHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHV 122 Query: 58 YRSDFKKNKAQYAERALKLLKTVGLDGYADKFPWELSGGMQQRASXKNLL 107 R AQ R LK VGL+ + P ELSGGMQ RAS L Sbjct: 123 PR-------AQADARVAASLKRVGLESFHAVLPRELSGGMQMRASIARAL 165 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 64.3 bits (155), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 1 MKLATGLKRPTRGSIAIAGADVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRS 60 + +A GL++P+ GS+A G + GP + FQ L PW T NV L LE Sbjct: 45 LHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEF-----Q 99 Query: 61 DFKKNKAQYAERALKLLKTVGLDGYADKFPWELSGGMQQRAS 102 K KA AE+A L+ V L G+ +P ++SGGM+QRA+ Sbjct: 100 SVDKKKA--AEQARVWLENVKLKGFEHYYPHQVSGGMRQRAA 139 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 334,966 Number of extensions: 12082 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 18 Length of query: 108 Length of database: 1,619,870 Length adjustment: 72 Effective length of query: 36 Effective length of database: 1,278,950 Effective search space: 46042200 Effective search space used: 46042200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)