BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0076.0008.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate A...   574   e-165

>gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 373

 Score =  574 bits (1479), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/344 (80%), Positives = 312/344 (90%), Gaps = 1/344 (0%)

Query: 1   MHANKLFKFTAAVLLS-ATCSASFAQETKIKFQLDWRFEGPSALFLVAKSKGYFAQEKLD 59
           M + +    +AA+LL   + S++FAQ+T+IKFQLDWRFEGP+ALFLVAKSKGYFAQEKLD
Sbjct: 30  MRSFRFLGCSAALLLGLVSASSTFAQDTRIKFQLDWRFEGPAALFLVAKSKGYFAQEKLD 89

Query: 60  VVIDAGSGSGNAVNRVASGTYDMGFADMAALMEFTANNPASPGKPMAVMMVYNDTPAAIF 119
           V IDAG+GSGNAVNRVASGTYDMGFADMAALMEFTANNP +PGKP+AVMMVYNDTPAA+F
Sbjct: 90  VTIDAGNGSGNAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVMMVYNDTPAAVF 149

Query: 120 SLKKTGIRTPADLVGKKLGSPVFDAGRRGYPIFAKANGLDASKANWISMDPPLRETMLAR 179
           SLKK+GI+ PADL GKKLG+PVFDAGRR YPIFAKANGLDASKA W SMDPPLRETMLAR
Sbjct: 150 SLKKSGIKKPADLAGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSMDPPLRETMLAR 209

Query: 180 GDVDAITGFYFTSLLNLNARGIKDSDINVMMYPDYGVKLYGNAIIANESLMKTNPEALKG 239
           GDVDAITGFYFTSLLNLNARGIKD DINVMMYPDYGV+LYGN IIA+++++K  PEA+KG
Sbjct: 210 GDVDAITGFYFTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIASDTMVKNKPEAIKG 269

Query: 240 FLRAFAKATKDVLADPEGAIKVLKERDGLIDAKLELRRLKLAISSAIATPHAKAEGYGQV 299
           FLRAFAKA++DV+A PE AIKVLKERDGLID KLELRRLKLAI+SAIATPHAK+EGYGQV
Sbjct: 270 FLRAFAKASRDVMAHPEAAIKVLKERDGLIDEKLELRRLKLAIASAIATPHAKSEGYGQV 329

Query: 300 SLPRLTLMASQVSDAYATKTRVNAEKIWTPAYLPSKELLNVFGK 343
             PRLTLMASQVSDAY TKTRVNA+KIW  ++LP+K  L+VF K
Sbjct: 330 YGPRLTLMASQVSDAYGTKTRVNADKIWNGSFLPTKAELDVFPK 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,045,621
Number of extensions: 43743
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)