BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0076.0001.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir...   225   3e-60

>gi|300314019|ref|YP_003778111.1| amino acid deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  225 bits (573), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 157/238 (65%), Gaps = 8/238 (3%)

Query: 5   LQQSVLSFLDAEHAAQTRFLQELVRVPSDNPSGDCAAHGARAQALLEQLGFDVEVHVVQE 64
           L Q + +++D     +   LQ+L+R+P+D P G+ A H      L+   G+  E HVV  
Sbjct: 6   LSQRLCAWIDQHFDEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEKHVVPA 65

Query: 65  ELVKANGMISAANLIVRKRFGSGGPTIALNAHGDVVPPGLGWSKDPYGGEIVQDAEHGPV 124
           + V   GM S  NLIVR+ +G GGPT+ALNAHGDVVPPG GW+ DPYGGEI         
Sbjct: 66  QQVADYGMQSITNLIVRRPYGDGGPTLALNAHGDVVPPGEGWTHDPYGGEIADGR----- 120

Query: 125 MYGRGVAVSKSDFATYTWALLALIAAEKQGAVLNGAIELQFTYDEEAGGDIGPRWILEQG 184
           +YGR  AVSKSDFA+Y +A  AL   E  GA L G +EL FTYDEE GG +GP W+LEQ 
Sbjct: 121 IYGRAAAVSKSDFASYLFATRAL---EAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQK 177

Query: 185 LSKPDYAVSAGFAYGITSAHNGCLHLEVTVKGKQAHAAMPHTGIDAIEAATGILQALY 242
           L++PDY ++AGF+Y + +AHN CL  E+TV G+  H +MP TG DA++AAT IL A+Y
Sbjct: 178 LTRPDYVLAAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIY 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 832,747
Number of extensions: 36354
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)