BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0059.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313617|ref|YP_003777709.1| translation elongation factor [...   163   5e-42
gi|300309453|ref|YP_003773545.1| elongation factor G1 [Herbaspir...   154   4e-39
gi|300312224|ref|YP_003776316.1| peptide chain release factor 3 ...    65   3e-12

>gi|300313617|ref|YP_003777709.1| translation elongation factor
           [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  163 bits (413), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 76/77 (98%)

Query: 51  FDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKGMAGN 110
            DAGKTTTTERILFYTGVNHKIGEVH+GAATMDWMEQEQERGITITSAATTAFWKGMAGN
Sbjct: 19  IDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITSAATTAFWKGMAGN 78

Query: 111 YPEHRINIIDTPGHVDF 127
           YPEHRINIIDTPGHVDF
Sbjct: 79  YPEHRINIIDTPGHVDF 95



 Score = 81.6 bits (200), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/39 (97%), Positives = 39/39 (100%)

Query: 1   MVFPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRV 39
           M+FPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRV
Sbjct: 407 MIFPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRV 445


>gi|300309453|ref|YP_003773545.1| elongation factor G1
           [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  154 bits (389), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 72/77 (93%)

Query: 51  FDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKGMAGN 110
            DAGKTTTTER+LFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATT +WKGMA N
Sbjct: 19  IDAGKTTTTERVLFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCYWKGMANN 78

Query: 111 YPEHRINIIDTPGHVDF 127
           +P H INIIDTPGHVDF
Sbjct: 79  FPAHHINIIDTPGHVDF 95



 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/39 (94%), Positives = 38/39 (97%)

Query: 1   MVFPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRV 39
           MVFPEPVISQAVEPKTKADQEKMG+ALNRLA EDPSFRV
Sbjct: 407 MVFPEPVISQAVEPKTKADQEKMGLALNRLAAEDPSFRV 445


>gi|300312224|ref|YP_003776316.1| peptide chain release factor 3
           [Herbaspirillum seropedicae SmR1]
          Length = 530

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 11/80 (13%)

Query: 52  DAGKTTTTERILFYTGVNHKIGEVHDGA----ATMDWMEQEQERGITITSAATTAFWKGM 107
           DAGKTT TE++L ++G     G V        AT DWME E++RGI++ S+        M
Sbjct: 19  DAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSV-------M 71

Query: 108 AGNYPEHRINIIDTPGHVDF 127
              Y +H +N++DTPGH DF
Sbjct: 72  QFEYRDHVVNLLDTPGHQDF 91


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 557,852
Number of extensions: 22046
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)