BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0058.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313617|ref|YP_003777709.1| translation elongation factor [... 658 0.0 gi|300309453|ref|YP_003773545.1| elongation factor G1 [Herbaspir... 635 0.0 gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor p... 57 3e-09 >gi|300313617|ref|YP_003777709.1| translation elongation factor [Herbaspirillum seropedicae SmR1] Length = 701 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/363 (87%), Positives = 345/363 (95%), Gaps = 1/363 (0%) Query: 1 MVNSGDTVYNPIKGKKERLGRILQMHANERKEIKEVYAGDIAAAVGLKDVTTGDTLSDPD 60 +VNSGDTVYNP+KGKKERLGRILQMHANERKEIKEV+AGDIAAAVGLKDVTTGDTLSDP+ Sbjct: 340 IVNSGDTVYNPVKGKKERLGRILQMHANERKEIKEVFAGDIAAAVGLKDVTTGDTLSDPE 399 Query: 61 HVIILERMVFPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGM 120 H IILERM+FPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRV TDEESGQTI+SGM Sbjct: 400 HPIILERMIFPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRVHTDEESGQTIMSGM 459 Query: 121 GELHLEILVDRMKREFNVEATVGKPQVAYREAIRKTVEDVEGKFVKQSGGRGQYGHVVLK 180 GELHLEILVDRMKREFNVEATVGKPQVAYREAIRK VEDVEGKFVKQSGGRGQYGHVV+K Sbjct: 460 GELHLEILVDRMKREFNVEATVGKPQVAYREAIRKAVEDVEGKFVKQSGGRGQYGHVVIK 519 Query: 181 LEPLPPGKGYEFVDAIKGGVVPREFIPAVDKGIQETLGSGVLAGYPVVDIRATLTFGSYH 240 LEP P GKGYEFVDAIKGGVVPREFIPAVDKGIQE+L +GVLAGYPVVD++ATLTFGSYH Sbjct: 520 LEPQPAGKGYEFVDAIKGGVVPREFIPAVDKGIQESLKAGVLAGYPVVDVKATLTFGSYH 579 Query: 241 DVDSNENAFRMAGSMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRGMVQG 300 DVDSNENAFRMAGSMAFKE M+RA P+LLEPMM VEVETPE++ G VMGDLSSRRGMVQG Sbjct: 580 DVDSNENAFRMAGSMAFKEAMKRAGPMLLEPMMQVEVETPEEFMGNVMGDLSSRRGMVQG 639 Query: 301 MDEIAGGGGKIIKAEVPLSEMFGYSTSLRSATQGRATYTMEFKHYAEAPRQVIEQLTTSR 360 M+++ GGGK+++AEVPLSEMFGYST+LRS +QGRATY+MEFKHYAEAPRQV+EQL+ + Sbjct: 640 MEDMV-GGGKLVRAEVPLSEMFGYSTTLRSLSQGRATYSMEFKHYAEAPRQVVEQLSGGK 698 Query: 361 KDG 363 G Sbjct: 699 GKG 701 >gi|300309453|ref|YP_003773545.1| elongation factor G1 [Herbaspirillum seropedicae SmR1] Length = 701 Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/359 (84%), Positives = 334/359 (93%) Query: 2 VNSGDTVYNPIKGKKERLGRILQMHANERKEIKEVYAGDIAAAVGLKDVTTGDTLSDPDH 61 +NSGDTV N +K KKER+GRI+QMHAN+R+EIKE+ AGDIAA VGLKD TTGDTL D Sbjct: 341 LNSGDTVLNSVKSKKERIGRIVQMHANQREEIKEMMAGDIAAVVGLKDTTTGDTLCDDKA 400 Query: 62 VIILERMVFPEPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMG 121 +++LERMVFPEPVISQAVEPKTKADQEKMG+ALNRLA EDPSFRVRTDEESGQTII+GMG Sbjct: 401 MVVLERMVFPEPVISQAVEPKTKADQEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMG 460 Query: 122 ELHLEILVDRMKREFNVEATVGKPQVAYREAIRKTVEDVEGKFVKQSGGRGQYGHVVLKL 181 ELHL+I+VDRMKREFNVEATVGKPQVAYRE IRKT E+ EGKFVKQSGGRGQYGHVVLK+ Sbjct: 461 ELHLDIIVDRMKREFNVEATVGKPQVAYRETIRKTCEESEGKFVKQSGGRGQYGHVVLKI 520 Query: 182 EPLPPGKGYEFVDAIKGGVVPREFIPAVDKGIQETLGSGVLAGYPVVDIRATLTFGSYHD 241 EP GKG+EFVDAIKGG VPREFIPAV+KG++ETL +GVLAGYPVVD++ TL FGSYHD Sbjct: 521 EPQEAGKGFEFVDAIKGGTVPREFIPAVEKGVRETLNTGVLAGYPVVDVKVTLFFGSYHD 580 Query: 242 VDSNENAFRMAGSMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGM 301 VDSNENAFRMAGSMAFKEG RRASPV+LEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGM Sbjct: 581 VDSNENAFRMAGSMAFKEGCRRASPVILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGM 640 Query: 302 DEIAGGGGKIIKAEVPLSEMFGYSTSLRSATQGRATYTMEFKHYAEAPRQVIEQLTTSR 360 DEIAGGGGKIIKAEVPLSEMFGYST+LRSATQGRATY+MEFKHY+EAP+ VI+ + TS+ Sbjct: 641 DEIAGGGGKIIKAEVPLSEMFGYSTTLRSATQGRATYSMEFKHYSEAPKNVIDAIVTSK 699 >gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 627 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 11/148 (7%) Query: 13 KGKKERLGRILQMHANERKEIKEVYAGDIAAAVGLKDVTTGDTLSDPDHVIILERMVFPE 72 K K R+ ++L ER + E AGDI G++++ G T+ PD L + E Sbjct: 263 KPTKARINQVLTFKGLERVLVDEALAGDIVLINGIEEIGIGSTICSPDAPNGLPMLKVDE 322 Query: 73 PVISQAVEPKTKADQEKMGIAL------NRLAQE---DPSFRVRTDEESGQTI-ISGMGE 122 P ++ T + G + +RL +E + + RV E T +SG GE Sbjct: 323 PTLTMNFMVNTSPLAGREGKFVTTRQIRDRLEKELKSNMALRVVQAENDDSTYEVSGRGE 382 Query: 123 LHLEILVDRMKREFNVEATVGKPQVAYR 150 LHL IL++ M+RE E V +P+V +R Sbjct: 383 LHLTILIENMRRE-GFELAVSRPRVVFR 409 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,120,454 Number of extensions: 47832 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 3 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)