BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0053.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881...   460   e-130

>gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  460 bits (1183), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/275 (82%), Positives = 246/275 (89%)

Query: 14  LQQLKSELQRHQQDLAERSERELRDQLQSNAQSTRQELGGNFGQLQQTLAAQMTSVATLQ 73
           L  ++  LQRHQQD+ ER ERELR Q+Q++AQSTRQELG +F QLQQTLA QM SVA+LQ
Sbjct: 2   LAHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMASVASLQ 61

Query: 74  NNQIDSFAQQLVKLNETNAQQLDGMRQTMNLQAQASREEQAVSLKRFGDTLNQTLTALTE 133
           N QID FAQQLVKLNETNAQQLD MRQ++ LQAQ SREEQAVSLKRFGDTLNQ L+ALTE
Sbjct: 62  NQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALTE 121

Query: 134 SNAQRMAEVRATLEAKIKDLQLDNGNRLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 193
           SNAQRM EVRATLEAKIKDLQ DN  +L+EMRKTVDEKLHATLEQRLGESFKLVSDRLDK
Sbjct: 122 SNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 181

Query: 194 VHQGLGEMQQLAIGVGDLKRVLTNVKTRGTWGEVQLEMLLEQMLTPDQYAKNVETVPNTG 253
           VHQGLGEMQQLA GVGDLKRVLTNVKTRGTWGEVQLE+LLEQMLTP+QY KNVETV  +G
Sbjct: 182 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGSG 241

Query: 254 ERVEFAIKLPGNDDGGMPVWMPIDAKFPKEQYERL 288
           ERVEFAI+LPG  + G PVWMPIDAKFPKEQYERL
Sbjct: 242 ERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERL 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,150,085
Number of extensions: 41365
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)