BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0047.p (335 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 202 2e-53 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 198 6e-52 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 194 7e-51 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 177 1e-45 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 174 1e-44 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 98/200 (49%), Positives = 139/200 (69%), Gaps = 4/200 (2%) Query: 19 LLQVRDLHAHYGKSHILQGVSFDVGHGEVISLLGRNGSGRSTTARAIMGLVPPTGGQVLL 78 +LQV D+H +YGKSHILQGVS V GEV++LLGRNG+G++TT ++I+G+VPP G+VL Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 79 DGKDLAGSRPYAICRAGIAFVPEEREVFGNLSVDENLQMGMQPGHKDAPQWTVEHMFDFF 138 +G+ ++G Y I G+ VPE R +F L+V+ENL M + W +E ++ F Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAA----RKESAWGLEEIYAIF 117 Query: 139 PRLKERRNTRAGNLSGGEQQMLTICRSLLGNPRVILIDEPTEGLAPKIVAVVGEAIQEIH 198 PRLKERR G LSGGEQQML I R+L+ +PRV+++DEP EGLAP IV + I++I Sbjct: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 Query: 199 RRGVSVVLVEQKLTIALKIS 218 G+S++LVEQ L + +++ Sbjct: 178 ATGMSIILVEQNLEVCTQLA 197 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 198 bits (503), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 139/201 (69%), Gaps = 1/201 (0%) Query: 19 LLQVRDLHAHYGKSHILQGVSFDVGHGEVISLLGRNGSGRSTTARAIMGLVPPTGGQVLL 78 LL V L A YG S +L GV V GE++S+LGRNG+GRST +A+MGL+P + G Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP-SRGDCRF 65 Query: 79 DGKDLAGSRPYAICRAGIAFVPEEREVFGNLSVDENLQMGMQPGHKDAPQWTVEHMFDFF 138 +G+D++G +AI R G+ +VPE REVF LSV +NL +G +PG + W + + F Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 139 PRLKERRNTRAGNLSGGEQQMLTICRSLLGNPRVILIDEPTEGLAPKIVAVVGEAIQEIH 198 P L +RR A LSGGEQQML + R+LLGNP ++L+DEPTEGLAP++V V A+QE+ Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 199 RRGVSVVLVEQKLTIALKISK 219 RGV+V+LVEQK +AL++S+ Sbjct: 186 TRGVAVLLVEQKQALALELSQ 206 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 194 bits (494), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 94/196 (47%), Positives = 133/196 (67%) Query: 19 LLQVRDLHAHYGKSHILQGVSFDVGHGEVISLLGRNGSGRSTTARAIMGLVPPTGGQVLL 78 LLQV+ LH Y +HIL G+ ++ GEV++L+GRNG+G+STT +A+MGL+ GQ+ L Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 79 DGKDLAGSRPYAICRAGIAFVPEEREVFGNLSVDENLQMGMQPGHKDAPQWTVEHMFDFF 138 G+D+ P+ R G+ +VPE+R +F LSV ENL+ G QP AP WT + +F+ F Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 139 PRLKERRNTRAGNLSGGEQQMLTICRSLLGNPRVILIDEPTEGLAPKIVAVVGEAIQEIH 198 P L G +SGGEQQMLTI R+L+GNPR++L+DEP+EG+AP IV + IQE+ Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 199 RRGVSVVLVEQKLTIA 214 R G++++L EQ L A Sbjct: 185 RSGIAILLCEQNLHFA 200 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/205 (44%), Positives = 134/205 (65%), Gaps = 5/205 (2%) Query: 19 LLQVRDLHAHYGKSHILQGVSFDVGHGEVISLLGRNGSGRSTTARAIMGLVPPTGGQVLL 78 +L + +LHA YGK +L G+S +V G+V++L+G NG+G++TT RAI G++ P GG+V L Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 79 DGKDLAGSRPYAICRAGIAFVPEEREVFGNLSVDENLQMGMQPGHKDA-PQWTVEH---- 133 GK++ G + I R G+A PE R VF +SV +NL +G P A P+ + H Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 134 MFDFFPRLKERRNTRAGNLSGGEQQMLTICRSLLGNPRVILIDEPTEGLAPKIVAVVGEA 193 + FPRLKER++ AG LSGGEQQML + R+++ NP VIL+DEP+ GLAP +V V Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 194 IQEIHRRGVSVVLVEQKLTIALKIS 218 I + +GV+++LVEQ AL ++ Sbjct: 181 IVRLKEQGVTMLLVEQFAAAALNVA 205 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 174 bits (440), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 131/201 (65%), Gaps = 1/201 (0%) Query: 19 LLQVRDLHAHYGKSHILQGVSFDVGHGEVISLLGRNGSGRSTTARAIMGLVPPTGGQVLL 78 +LQV +L+ +YG +H L+GVS DV G+V+SLLGRNG G++T + +MG++P G V+ Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 79 DGKDLAGSRPYAICRAGIAFVPEEREVFGNLSVDENLQMGMQPGHKDAPQWTVEHMFDFF 138 +G D+ +P+ + GIA+VP+ RE+F L+V+EN+ MGM +++ F Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 139 PRLKERRNTRAGNLSGGEQQMLTICRSLLGNPRVILIDEPTEGLAPKIVAVVGEAIQEIH 198 P LKE + R G+LSGG+QQ L I R+LL P++I++DEPTEG+ P I+ +G I + Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 199 RRG-VSVVLVEQKLTIALKIS 218 +RG + ++L EQ A +++ Sbjct: 181 QRGDIGILLCEQYFDFARELA 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,067,289 Number of extensions: 43924 Number of successful extensions: 472 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 133 Length of query: 335 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 249 Effective length of database: 1,212,660 Effective search space: 301952340 Effective search space used: 301952340 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)