BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0046.p
         (59 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa...    64   2e-12
gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa...    63   5e-12
gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t...    58   1e-10
gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa...    57   4e-10
gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t...    56   6e-10

>gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 40/47 (85%)

Query: 10  IVEHDMDVVFSLCDRISVLVYGQVVATGTPEEVRSNAQVQEAYLGTE 56
           +VEHDM+ VF+L DR++VLV G V+ATG+ +E+R+NA+V+ AYLG E
Sbjct: 206 LVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVKLAYLGEE 252


>gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 62.8 bits (151), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 38/47 (80%)

Query: 10  IVEHDMDVVFSLCDRISVLVYGQVVATGTPEEVRSNAQVQEAYLGTE 56
           ++EHDM  V  LC+RI+VL +G+++A GTP+++++N +V EAYLG E
Sbjct: 205 MIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 251


>gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 37/48 (77%)

Query: 10  IVEHDMDVVFSLCDRISVLVYGQVVATGTPEEVRSNAQVQEAYLGTEV 57
           ++EH+MD+V  + DRI+V+  GQ++A G P E+RS+ +V+ AYLG+ +
Sbjct: 203 LIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRAYLGSMI 250


>gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score = 56.6 bits (135), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 32/46 (69%)

Query: 10  IVEHDMDVVFSLCDRISVLVYGQVVATGTPEEVRSNAQVQEAYLGT 55
           ++EHDM VV  + DR+ VL YG+ +  GTPEEV  N  V +AYLGT
Sbjct: 246 LIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGT 291


>gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 55.8 bits (133), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 36/47 (76%)

Query: 10  IVEHDMDVVFSLCDRISVLVYGQVVATGTPEEVRSNAQVQEAYLGTE 56
           ++EHDM ++  + DRI V+ +G+ + TGTPE+VRS+ +V +AYLG E
Sbjct: 212 LIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKAYLGEE 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 153,992
Number of extensions: 4167
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 11
Length of query: 59
Length of database: 1,619,870
Length adjustment: 32
Effective length of query: 27
Effective length of database: 1,468,350
Effective search space: 39645450
Effective search space used: 39645450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)