BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0045.p (434 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC t... 185 6e-48 gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 121 1e-28 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 111 1e-25 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 106 3e-24 gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 101 1e-22 >gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 185 bits (470), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 211/390 (54%), Gaps = 23/390 (5%) Query: 39 LLLVALPGLLSQ-ALVNAAIQMLIGALFASAFNVLAGQGGMLSFGHAAYFGIGAFATLHA 97 L+L+A P + Q A ++ QM L ++N+L G+GGMLSFGHA Y G+GAF +H Sbjct: 15 LVLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAFGAIHL 74 Query: 98 MNALSGEGLL--PTPLMPVFGALGGAALGLVAGWFSTQRSGVYFSMITLALAELLHALAP 155 MN ++ EG L P L+P+ G L GA G++ G+ +T+R+G F+MITL L EL+ A Sbjct: 75 MNRMA-EGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITLGLVELVSACVL 133 Query: 156 HLKSTFGGEGGVSSMRM---PAWGISFGNPSEVYYLTLVWVVGSLALLYFFSRTPLGRLT 212 FGGEGG+S R+ P GIS+G +VYYL W++ ++ TPLGR+ Sbjct: 134 MFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIWALRATPLGRIL 193 Query: 213 LGLRENAHRLKFLGYNVHVLRVLVFMISAMFAGIAGGLLAMNNEAANYVLFDVRLSSEVV 272 +R+N R F+GY+ +R L ++SA FAG++GGL A+N E + S ++ Sbjct: 194 NAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALRSGAIL 253 Query: 273 LNAYIGGVGVFFGPALGAAVMTFFGYAVSDLTRSWLLYQGIIFVAVMMFMPSGLSGIFSW 332 L +IGG F+GP +G V F +S T++W Y G F+ ++M P GL+ + Sbjct: 254 LFTFIGGSAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMTAPGGLASLIDQ 313 Query: 333 -W---KSSKHDSAVLLRHVLGWSIGTVLCAAATVFTVEL-LQRALGADYQSLLVPGQVWP 387 W +S D+ + +R W + A V E+ Q +LG+ ++ P + W Sbjct: 314 GWRILRSGAFDTRMAVRAT-AWLAAALPVLAGLVLATEMAYQASLGSLAEA---PLRWW- 368 Query: 388 GIDLFGRTWLPGAVLTWIVPLVLVMAGGLA 417 G T A L W+ L L+M+GG+A Sbjct: 369 -----GWTVDVHAPLPWMTAL-LLMSGGVA 392 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 143/259 (55%), Gaps = 18/259 (6%) Query: 57 IQMLIGALFASAFNVLAGQGGMLSFGHAAYFGIGAFATLHAMNALSGEGLLPTPLMPVFG 116 ++ML ALFA AFN+L G G+LSFGHAA+ G + A+ LPT L + G Sbjct: 27 MKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWG----LPTELGLIIG 82 Query: 117 ALGGAALGLVAGWFSTQRSGVYFSMITLALAELLHALAPHLKSTF-GGEGGVSSM-RMPA 174 L GA +GLV G + +R G+YF+MITLALA++L +A L++ F GGE G+ + R Sbjct: 83 TLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA--LQAPFTGGEDGLQGVPRGKL 140 Query: 175 WG-ISFGNPSEVYYLTLVWVVGSLALLYFFSRTPLGRLTLGLRENAHRLKFLGYNVHVLR 233 G ++ + +YY+ L V AL+ +P G++ ++EN R LGY+V + Sbjct: 141 LGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVARYK 200 Query: 234 VLVFMISAMFAGIAGG--LLAMNNEAANYVLFDVR--LSSEVVLNAYIGGVGVFFGPALG 289 +L F++SA +G+AG L + E L DV +S VVL +GG+G GP +G Sbjct: 201 LLAFVLSAGLSGLAGATKTLVLGFET----LTDVHWSMSGLVVLMTLVGGLGTILGPIVG 256 Query: 290 AAVMTFFGYAVSDLTRSWL 308 A ++ + D+ +WL Sbjct: 257 AVIIIMLENKLGDIG-AWL 274 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 57 IQMLIGALFASAFNVLAGQGGMLSFGHAAYFGIGAFATLHAMNALSGEGLLPTPLMPVFG 116 +++L+ LFA++ + L G GGM+SFGHAAYFG+GA+A A+ L + P PL + G Sbjct: 352 VEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAA--ALVTLRLQ--WPMPLAMLAG 407 Query: 117 ALGGAALGLVAGWFSTQRSGVYFSMITLALAELLHALAPHLKSTFGGEGGVSSMRMPAWG 176 A L+ GWF + SGVY +M+TLA A+++ A GG G+ +R A Sbjct: 408 AGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNGLVGLRTAA-- 465 Query: 177 ISFGNPSEVYYLTLVWVVGSLALLYFFSRTPLGRLTLGLRENAHRLKFLGYNVHVLRVLV 236 + +P YYL L+ + LL P G R+ + R + LG +V L+ Sbjct: 466 -ALASPLAYYYLALLCSALGVYLLRRVIHAPFGLALRAARDASGRAQALGMDVRALQWGG 524 Query: 237 FMISAMFAGIAGGLLAMNNEAANYVLFDVRLSSEVVLNAYIGGVGVFFGPALGAAVMTFF 296 F ++ +F G+AG L A + + + + V S + ++ +GGV GP LGA+V T+ Sbjct: 525 FALAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLVMVLLGGVQSLAGPLLGASVFTWL 584 Query: 297 GYAVSDLTRSW 307 V+ T W Sbjct: 585 QDLVARETDYW 595 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 149/283 (52%), Gaps = 7/283 (2%) Query: 58 QMLIGALFASAFNVLAGQGGMLSFGHAAYFGIGAFATLHAMNALSGEGLLPTPLMPVFGA 117 ++LI A+ A++ N + G GGM+SFGHA +FG+GA+ T A S G+ L+ + A Sbjct: 34 RILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIA----SFHGVTSAWLIWLLAA 89 Query: 118 LGGAALGLVAGWFSTQRSGVYFSMITLALAELLHALAPHLKSTFGGEGGVSSMRMP--AW 175 L A +GLV G + + VYF MIT+ALA+L + + +GG+ G+ P + Sbjct: 90 LVTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFR-YYGGDDGLQVTARPLLGF 148 Query: 176 GISFGNPSEVYYLTLVWVVGSLALLYFFSRTPLGRLTLGLRENAHRLKFLGYNVHVLRVL 235 G+ + Y++ L W+ S LL + G +R+N R + +GY ++ Sbjct: 149 GLDMSGDNAFYWVVLAWLAASFILLQRLLASRFGLALNAIRQNERRAQAIGYPALRYKLA 208 Query: 236 VFMISAMFAGIAGGLLAMNNEAANYVLFDVRLSSEVVLNAYIGGVGVFFGPALGAAVMTF 295 F+I+A+ AGIAG L+ M+N A+ L S +++ +GGVG F+G LGAA Sbjct: 209 AFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGGLLGAAAFLL 268 Query: 296 FGYAVSDLTRSWLLYQGIIFVAVMMFMPSGLSGIFSWWKSSKH 338 +S W +Y G+I + V+M P G+S + S K+ K Sbjct: 269 LEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSSLVSIGKTLKQ 311 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 12/281 (4%) Query: 56 AIQMLIGALFASAFNVLAGQGGMLSFGHAAYFGIGAFATLHAMNALSGEGLLPTPLMPVF 115 A ++L+ AL A N+L G G++SFG +FG+G++ + + L Sbjct: 30 ATEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTA----GVVLLQLKLALLPALAL 85 Query: 116 GALGGAALGLVAGWFSTQRSGVYFSMITLALAELLHALAPHLKSTFGGEGGVSSMRMPAW 175 ALGGA + L+ GWFS ++ G YF M+TLA A++ + LA +K GG+ G+ + P Sbjct: 86 AALGGALVALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPL 145 Query: 176 GISFG-----NPSEVYYLTLVWVVGSLA--LLYFFSRTPLGRLTLGLRENAHRLKFLGYN 228 + FG S Y T+V ++ L LL + LG+ L +REN R LGY+ Sbjct: 146 AL-FGLTLLPTTSSWQYYTVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYD 204 Query: 229 VHVLRVLVFMISAMFAGIAGGLLAMNNEAANYVLFDVRLSSEVVLNAYIGGVGVFFGPAL 288 V +L++ F+IS G+AGGL AM A + S +++ IGG G F L Sbjct: 205 VRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVL 264 Query: 289 GAAVMTFFGYAVSDLTRSWLLYQGIIFVAVMMFMPSGLSGI 329 GA+ G +S L WL+ G++ +AV ++M GL G+ Sbjct: 265 GASFYVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQKGLFGL 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,174,048 Number of extensions: 46972 Number of successful extensions: 313 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 284 Number of HSP's successfully gapped: 19 Length of query: 434 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 346 Effective length of database: 1,203,190 Effective search space: 416303740 Effective search space used: 416303740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)