BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0043.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313460|ref|YP_003777552.1| branched-chain amino acid ABC t...    94   7e-21

>gi|300313460|ref|YP_003777552.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score = 94.0 bits (232), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 10  SKIKASGAETVLTGNWSNDLLLLMKATRAAGLKLRFGTVF---LDQPGNIGNAGDTALGH 66
           +K++++GA+ V+TGNW NDL LL+KA R AG K +F T +   L  P  IG AG   +  
Sbjct: 233 AKMRSAGADAVITGNWGNDLTLLVKAARDAGFKAKFYTFYANSLGAPAAIGEAGVGVVRA 292

Query: 67  YISHAFNIETNKQTEQFGNDYKAKTGHYPTFIEPQTVFGMQMLGEALKQTKVSGDKVNVT 126
                 N   N  +      Y+A    YP   +      MQ++ + L +        +  
Sbjct: 293 VAEWHPNAGGNPGSPSDAY-YQAFRQRYPQPKDDYLYLRMQVMIDMLAKAIEKAGSADPK 351

Query: 127 ELAKALEKVKIETPMGETSIRAADHQVLLPVVVSRVEK----NVKYKVDDTDMGFKVVRK 182
            +A ALE  + ++     ++RA DHQ++ P+ + ++++     +++  + +  GF+  R 
Sbjct: 352 AVAYALEGAQYQSAFHSATMRAQDHQLIQPLYLMQMQRADSGGIRFDNEGSGYGFRTERF 411

Query: 183 FSAEEAANPVQSSCKMQRP 201
             AE+ A P  SSC+MQRP
Sbjct: 412 IPAEQTALP--SSCRMQRP 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,899
Number of extensions: 21598
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)