BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0039.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313460|ref|YP_003777552.1| branched-chain amino acid ABC t...   117   1e-27

>gi|300313460|ref|YP_003777552.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 9/202 (4%)

Query: 25  LKIALVETLSGPQASTGLLYRAAVKYELDRLNAAGGWNGVP-----VQITEYDNQGGPAG 79
           ++I +++ LSGP A+ G      + Y ++R+NA GG   +P     +Q++ +DN+ G   
Sbjct: 34  IRIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGVT-LPDGKHLLQLSTFDNKLGVED 92

Query: 80  ASDKVKAAIAGGAQIIIQGSSSAVSGQITEDVRKYNLRNAGKEVLFLNMGGEALELTGDK 139
           +  + +         +I+G+SSAV+  + + V K+N R   + VLFLN       LT +K
Sbjct: 93  SLVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRVLFLNYSAVDPTLTNEK 152

Query: 140 CHFYHFRFTTNAVMRVKTLVPAMKETKELGSKVYAMNQNYSWGADMDKAIKE--FAPTGG 197
           C F+HFRF  +A MR++ L  A+K       KVY + Q+YS+G  + KA +E   A    
Sbjct: 153 CSFWHFRFDASADMRMQALTEAIK-ADTATRKVYLIGQDYSFGRQVAKAAREQLAAKRPD 211

Query: 198 YTVVESTLHDVNKIQDFSPYVA 219
             +V   LH + KI+DF+PY+A
Sbjct: 212 IAIVGDELHPIGKIKDFAPYIA 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,481
Number of extensions: 20141
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)