BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0033.p (238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313520|ref|YP_003777612.1| transcription regulator protein... 151 5e-38 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 124 7e-30 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 113 1e-26 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 99 5e-22 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 89 3e-19 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 151 bits (381), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 139/226 (61%), Gaps = 5/226 (2%) Query: 11 QSLTEDIVEWLNEEIRSQRLRPGDKLPSEKQLGEQFGVSRSVVREALSQLKSEGIVNSQQ 70 Q+L++ + L E I + G KLP+E L +QFGVSR+VVREA+++LK EG+V +Q Sbjct: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Query: 71 GRGVFVNERGSRQAFRLDATALDDAEGLEHVIELLVTLEAAAARYAAVRHTPEDLKRIKQ 130 G GVFV E+ + R+D T + E + ++EL +EA A AA R + EDL+ I+ Sbjct: 68 GSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 Query: 131 AL--VGMEYAIVNDRLGDEEDYAFHQAIVDSTKNPHFRMLNEYLERHVRRLIRQARTNTA 188 AL +G++ A D G D AFH+A+ +T+NP+F E+L +++ R N Sbjct: 128 ALAQIGVDVAAGGD--GVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNE- 184 Query: 189 ANYQNLIQAVQDEHKAIVKAIADRDPAAAALAAETHLRNAAKRLNK 234 A Y++ + V++EH+AIV+AI D AA AA+TH+ NAA+RL++ Sbjct: 185 ARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQ 230 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 124 bits (311), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 5/230 (2%) Query: 7 SASGQ-SLTEDIVEWLNEEIRSQRLRPGDKLPSEKQLGEQFGVSRSVVREALSQLKSEGI 65 SA G+ +L + + L +IR+ P +LPSE +L E+F VSR+V+REA+S+LKSEG+ Sbjct: 23 SARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGL 82 Query: 66 VNSQQGRGVFVNERGSRQAFRLDATALDDAEGLE---HVIELLVTLEAAAARYAAVRHTP 122 V S++G G V FRLD D + ++ VIEL +E A AA R T Sbjct: 83 VGSRRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTS 142 Query: 123 EDLKRIKQALVGMEYAIVNDRLGDEEDYAFHQAIVDSTKNPHFRMLNEYLERHVRRLIRQ 182 I+QAL ++ A R G ED+AFH AI +++ NP + L ++L + + IR Sbjct: 143 AQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRV 202 Query: 183 ARTNTAANYQNLIQAVQDEHKAIVKAIADRDPAAAALAAETHLRNAAKRL 232 AR N A + + +Q V+ EH A+ +AI+ D AA AA H+ N+A+RL Sbjct: 203 ARMNEARSNE-FVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 19/234 (8%) Query: 11 QSLTEDIVEWLNEEIRSQRLRPGDKLPSEKQLGEQFGVSRSVVREALSQLKSEGIVNSQQ 70 QSL++++V L I + L PGDKLP+E ++ + GVSR+VVREA+S+L++ G+V ++ Sbjct: 18 QSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Query: 71 GRGVFVNERGSRQAFRLDATALDDAEGLEHVIELLVTLEAAAARYAAVRHTPEDLKRIKQ 130 G G FV E +D + L ++EL ++LE A AA R T E L+ I++ Sbjct: 78 GIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEIRE 137 Query: 131 ALVGMEYAIVNDRLGDE---EDYAFHQAIVDSTKNPHFRMLNEYLERHVRRLIRQARTNT 187 AL + N + G + D+ FH AI ++T N +F + +L V I + R NT Sbjct: 138 AL---DLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGV---IPRKRINT 191 Query: 188 A-------ANYQNLIQAVQDEHKAIVKAIADRDPAAAALAAETHLRNAAKRLNK 234 A A+Y + VQ EH+ I +AIA D AA A HL N+ +RL + Sbjct: 192 AELAHDQQASY---LDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRR 242 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 14/227 (6%) Query: 12 SLTEDIVEWLNEEIRSQRLRPGDKLPSEKQLGEQFGVSRSVVREALSQLKSEGIVNSQQG 71 S +E I + I L KLP+E +L +++ SR+ VREALS+L+SEGIV S++G Sbjct: 18 SRSEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRG 77 Query: 72 RGVFV------NERGSRQAFRLDATALDDAEGLEHVIELLVTLEAAAARYAAVRHTPEDL 125 G +V + +GS Q + +E +E AA AA ED+ Sbjct: 78 SGNYVQRLPTLSSQGSPQ--------IASIHDVERYYAFRECVEVGAAGIAATARQDEDV 129 Query: 126 KRIKQALVGMEYAIVNDRLGDEEDYAFHQAIVDSTKNPHFRMLNEYLERHVRRLIRQART 185 + ++ AL ++ A + + G +ED A H AI +T+NP F E+ +R+ + A+ Sbjct: 130 QAMRIALQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEHALGPIRQCMELAQN 189 Query: 186 NTAANYQNLIQAVQDEHKAIVKAIADRDPAAAALAAETHLRNAAKRL 232 + IQ + DEH+AI++AIA+ PA A A H+ +A R+ Sbjct: 190 LGSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRI 236 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 102/222 (45%) Query: 11 QSLTEDIVEWLNEEIRSQRLRPGDKLPSEKQLGEQFGVSRSVVREALSQLKSEGIVNSQQ 70 + E + E L I R+ G KLPSE L F VSR VVR+AL +L+ + +V S + Sbjct: 30 ERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLR 89 Query: 71 GRGVFVNERGSRQAFRLDATALDDAEGLEHVIELLVTLEAAAARYAAVRHTPEDLKRIKQ 130 G G +V E+ + A + + +EL + +E A AA+R +DL R+++ Sbjct: 90 GSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMER 149 Query: 131 ALVGMEYAIVNDRLGDEEDYAFHQAIVDSTKNPHFRMLNEYLERHVRRLIRQARTNTAAN 190 L G E A + D+ FH+AI +T N F + + LE V + R Sbjct: 150 LLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIA 209 Query: 191 YQNLIQAVQDEHKAIVKAIADRDPAAAALAAETHLRNAAKRL 232 Q DEH+ I + I +D A A H+ NA R+ Sbjct: 210 PWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTRM 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 581,882 Number of extensions: 20260 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 16 Length of query: 238 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 156 Effective length of database: 1,231,600 Effective search space: 192129600 Effective search space used: 192129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)