BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0024.p
         (476 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane pr...   769   0.0  

>gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/484 (77%), Positives = 416/484 (85%), Gaps = 11/484 (2%)

Query: 3   AAKGETITITTDVVKADIDTVGGELKRLELLKHRDTADPAKNLVLFDSSAGHTYLAESGL 62
           A KGETI ITTD+VKA IDTVGGELKRLELLK  D  DP KN+VLFDS  GH YLAESGL
Sbjct: 57  ATKGETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGL 116

Query: 63  IGGPFPTHKSIFIAKPGARALDNGNEVPLVLEAQENGVKLTKTYTFKRGDYSIDLKHTVT 122
           IGGPFP HK+IF A+ G R LDNGNE+ LVL A + GVKLTKTYTFKR  Y ID+KHTVT
Sbjct: 117 IGGPFPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVT 176

Query: 123 NDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTDADKFQKLTFEKIEEGKEQHA 182
           N + AAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVY++++ F+KL FEKI  GK+QH 
Sbjct: 177 NTTGAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHV 236

Query: 183 NKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYAVGNILPLGTVAPGASVTMDA 242
           NK DNGWIA+VQHYFVSA IPP+ AQRD+F+KK+G NLYAVG+ILPLGTVAP ASVTMD+
Sbjct: 237 NKTDNGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDS 296

Query: 243 RLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMIHIHAYVGNWGWTIILLTMLI 302
           +LYSGP  S  L+   PGL+LV+DYG LT+IA+PIFWLM HIH  VGNWGWTIILLT+LI
Sbjct: 297 QLYSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLI 356

Query: 303 KAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNREMMSLYKTEKINPLGGCLP 362
           K +FFPLSAASYRSMAKMKAV+PKM AIRERHKGDPQAMNREMM+LYKTEKINPLGGCLP
Sbjct: 357 KLIFFPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLP 416

Query: 363 IVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPD-----------PFYILPVLMAVS 411
           I IQIPVFI+LY VLLASVEMRGAPWLGW+HDLTAPD           P  +LP++MA S
Sbjct: 417 IAIQIPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAAS 476

Query: 412 MFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNVLSITQQWVITRKL 471
           MF+QTKLNPTPPDPVQAKVMMFMP+VFS MFFFFPSGLVLYWV NN+LSI QQWVITR +
Sbjct: 477 MFLQTKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNI 536

Query: 472 QAGK 475
           ++GK
Sbjct: 537 ESGK 540


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,571,915
Number of extensions: 66055
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,198,455
Effective search space: 463802085
Effective search space used: 463802085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)