BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0023.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313622|ref|YP_003777714.1| ribonuclease P protein [Herbasp...   104   1e-24

>gi|300313622|ref|YP_003777714.1| ribonuclease P protein
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  104 bits (259), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 71/124 (57%), Gaps = 33/124 (26%)

Query: 9   YSRDQRIVKTDEFSSVVRX-------------------------------IFRAVTRNTI 37
           + RD+RIVKTDEFSSV R                                  RAVTRNTI
Sbjct: 16  FPRDRRIVKTDEFSSVFRLRPVHRTEHFVLYARRNSLTQARLGVVAAKRLAPRAVTRNTI 75

Query: 38  KRVTRELFRQTALALPQVDCIVRLSKPVNSKSGPATNTRLKAELRDELSQLFAFLLNATA 97
           KR TRELFRQ  L  P VDCIVRLS+PVN++  PA +  LKA L  EL QLFAFL NA A
Sbjct: 76  KRATRELFRQAEL--PAVDCIVRLSRPVNARRDPARSAALKAMLHAELRQLFAFLPNAPA 133

Query: 98  FARK 101
           FARK
Sbjct: 134 FARK 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 218,105
Number of extensions: 5485
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)