BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0014.p
         (1096 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313633|ref|YP_003777725.1| methionine synthase I, cobalami...  1821   0.0  

>gi|300313633|ref|YP_003777725.1| methionine synthase I,
            cobalamin-binding domain-containing protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1247

 Score = 1821 bits (4718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/977 (89%), Positives = 922/977 (94%)

Query: 1    MISGTVTDASGRILSGQTVPAFWHSIRHARPLTVGLNCALGAALMRPYAEELSKIADTFV 60
            MISGTVTDASGRILSGQTV AFW+SIRHARPLTVGLNCALGAALMRPYAEELSKIADTFV
Sbjct: 218  MISGTVTDASGRILSGQTVTAFWNSIRHARPLTVGLNCALGAALMRPYAEELSKIADTFV 277

Query: 61   CIYPNAGLPNPMSDTGFDETPDVTSSLLKDFAESGFVNVAGGCCGTTPAHIKAIADTVAS 120
            CIYPNAGLPNPMSDTGFDETPDVTS+LLK+FAESGFVNVAGGCCGTTP HIKAIA+TVA 
Sbjct: 278  CIYPNAGLPNPMSDTGFDETPDVTSALLKEFAESGFVNVAGGCCGTTPPHIKAIAETVAK 337

Query: 121  IAPRKLPEGKHEMLLSGLEPFIINDQSLYVNVGERTNVTGSKAFARLILNEQYDEALAVA 180
            IAPRK+PE  HEM LSGLEPF IND SLYVNVGERTNVTGSKAFARLILNEQYDEALAVA
Sbjct: 338  IAPRKVPEPTHEMRLSGLEPFTINDDSLYVNVGERTNVTGSKAFARLILNEQYDEALAVA 397

Query: 181  RQQVENGAQIIDINMDEAMLDSQAAMTRFLNLIASEPDIARVPVMIDSSKWSVIEAGLKC 240
            RQQVENGAQIIDINMDEAMLDS AAMTRFLNLIASEPDIARVP+MIDSSKW VIEAGLKC
Sbjct: 398  RQQVENGAQIIDINMDEAMLDSVAAMTRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKC 457

Query: 241  VQGKSIVNSISMKEGEEKFLHEAKLCRRYGAAVIVMAFDEVGQADTYERKIEICERAYRL 300
            VQGKSIVNSISMKEGEEKFL EAKLCRRYGAAVIVMAFDEVGQADT+ RKIEICERAYRL
Sbjct: 458  VQGKSIVNSISMKEGEEKFLREAKLCRRYGAAVIVMAFDEVGQADTFARKIEICERAYRL 517

Query: 301  LVDKVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIHQNLPYAKISGGVSNVSF 360
            LVDK+ FPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIHQNLPYAKISGGVSNVSF
Sbjct: 518  LVDKLDFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIHQNLPYAKISGGVSNVSF 577

Query: 361  SFRGNDPAREAIHTVFLYHAVKAGMTMGIVNAGMIGVYDDLPAELREAVEDVVLNRRPDA 420
            SFRGNDPAREAIHTVFLYHA+KAGMTMGIVNAGMIGVYDDLPAELRE VEDVVLNRR DA
Sbjct: 578  SFRGNDPAREAIHTVFLYHAIKAGMTMGIVNAGMIGVYDDLPAELRERVEDVVLNRREDA 637

Query: 421  TERMIDIAATLKAGDKKEEATLEWRSEPVEKRLAHALVLGITQWIVEDTEEARQNLLKSG 480
            TERMI+ AATLKAGDKKEEATLEWR+ PV KRL+HALV GITQWIVEDTEE RQ +   G
Sbjct: 638  TERMIEYAATLKAGDKKEEATLEWRNLPVAKRLSHALVHGITQWIVEDTEEVRQQIAADG 697

Query: 481  GRPIHVIEGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRLIEQE 540
            GRPIHVIEGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKR +E  
Sbjct: 698  GRPIHVIEGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRQLEIA 757

Query: 541  TGVVAKPKGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCSQILAKAKEENA 600
            TG VAKPKGKIVIATVKGDVHDIGKNIV+VVLQCNNFEVVNMGVMVPC++ILAKAKEE A
Sbjct: 758  TGEVAKPKGKIVIATVKGDVHDIGKNIVTVVLQCNNFEVVNMGVMVPCAEILAKAKEEKA 817

Query: 601  DIIGLSGLITPSLEEMAYVAKEMQRDSYFSGVKMPLLIGGATTSRAHTAVKIAPNYSGPV 660
            DIIGLSGLITPSLEEMAYVAKEMQRD YF+G+KMPL+IGGATTSRAHTAVKIAPNY GPV
Sbjct: 818  DIIGLSGLITPSLEEMAYVAKEMQRDPYFAGLKMPLMIGGATTSRAHTAVKIAPNYEGPV 877

Query: 661  VYVPDASRAVSVAQSLLTPEQKDQYITDIATDYERIREQHANKKAVPLVTIAAARDNKMQ 720
            VYVPDASRAVSVAQSLL  EQK QY+ ++  DYERIREQHA+KKA P++++AAAR NK +
Sbjct: 878  VYVPDASRAVSVAQSLLADEQKTQYVAELNADYERIREQHASKKAAPMLSLAAARANKTK 937

Query: 721  LEFAPVKPKFIGRRVFKNVDLATLAKYIDWGPFFQTWDLAGPYPAILTDEVVGEAASKVF 780
            L+FAPVKPKFIGRR+FKNVDL  LA YIDWGPFFQTWDLAGPYPAILTDEVVGEAA+KVF
Sbjct: 938  LDFAPVKPKFIGRRLFKNVDLGLLANYIDWGPFFQTWDLAGPYPAILTDEVVGEAATKVF 997

Query: 781  EEAQALLKKVIDGRWLTANGVVSLLPANTVNDDDIEIYTDDTRTQVALTYYGVRQQTEKP 840
            +EAQA+LKK+IDGRWLTANGV+SLLPANTVNDDDIEIYTDD+R+QVA TYYG+RQQTEKP
Sbjct: 998  QEAQAMLKKIIDGRWLTANGVISLLPANTVNDDDIEIYTDDSRSQVAFTYYGLRQQTEKP 1057

Query: 841  VIDGLARPNQCLADFIAPKASGIADYIGMFAVTSGLGIEKYEKRFEDAHDDYSSIMLKAL 900
            V+DG+ARPNQCL+DFIAPK SG+ DYIGMFAVT+GLGIEKYEKRFEDAHDDYSSIMLKAL
Sbjct: 1058 VVDGVARPNQCLSDFIAPKESGVQDYIGMFAVTAGLGIEKYEKRFEDAHDDYSSIMLKAL 1117

Query: 901  ADRLAEAFAEYLHERVRTDLWGYVPQESLSTEELIKEKYVGIRPAAGYPACPEHTVKAEA 960
            ADRLAEAFAEYLHERVR DLWGY   E+LS+ +LIKEKY+GIRPA GYPACPEHTVKA+ 
Sbjct: 1118 ADRLAEAFAEYLHERVRKDLWGYAADENLSSTDLIKEKYLGIRPAPGYPACPEHTVKADV 1177

Query: 961  FKVMQCDEIGMTVTESY 977
            F+ MQCDEIGM +TESY
Sbjct: 1178 FRTMQCDEIGMQLTESY 1194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,471,605
Number of extensions: 150058
Number of successful extensions: 423
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 1
Length of query: 1096
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 1001
Effective length of database: 1,170,045
Effective search space: 1171215045
Effective search space used: 1171215045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 136 (57.0 bits)