BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0010.p (464 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313637|ref|YP_003777729.1| thiol:disulfide interchange sig... 355 4e-99 gi|300313636|ref|YP_003777728.1| short-chain alcohol dehydrogena... 256 2e-69 gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein... 79 7e-16 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 70 3e-13 gi|300310391|ref|YP_003774483.1| 3-oxoacyl-[acyl-carrier-protein... 70 3e-13 >gi|300313637|ref|YP_003777729.1| thiol:disulfide interchange signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 355 bits (911), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 163/218 (74%), Positives = 189/218 (86%), Gaps = 4/218 (1%) Query: 1 MRLFRHALAAISLGLLA----VSAGASPANPQNGTDYRTLEQAQPTESGKKIEVTEFFWY 56 MR + LAA+S G+LA V A ASPANPQ GTDYR LEQAQPT+SG K+EVTEFFW+ Sbjct: 1 MRFHQKLLAAVSFGVLAFTASVGASASPANPQAGTDYRVLEQAQPTDSGNKVEVTEFFWF 60 Query: 57 SCPHCAAFDPALTAWVKKQGDKIVFKQVPVAFRDSFIPQQKLYYALEAMGKTAEMNPKIF 116 CPHCAA+DP+LTAWVKKQGDKI FK+VPVAFRDSF+PQQKLYY LEAMG+ E+ PKIF Sbjct: 61 DCPHCAAWDPSLTAWVKKQGDKISFKKVPVAFRDSFVPQQKLYYTLEAMGRADELTPKIF 120 Query: 117 QAIHVDRQRVDTDKTILEFIEKQGIDKQKFLDLYNSFGVQTKVRRASQLQEQYKIDGVPT 176 AIHV+ QR++TDKTIL +IEK GIDKQKFLDLYNSFG+QTK RRA+QLQE YK+DGVP Sbjct: 121 HAIHVENQRINTDKTILAYIEKAGIDKQKFLDLYNSFGIQTKARRAAQLQEAYKVDGVPM 180 Query: 177 IAIDGRYLTSPSIAGASMANQPESMQQAASLQVMDHLL 214 IAIDGRY+TSP++ G ++ANQPESMQQAA+LQVMDHL+ Sbjct: 181 IAIDGRYVTSPAVVGVALANQPESMQQAAALQVMDHLV 218 >gi|300313636|ref|YP_003777728.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 268 Score = 256 bits (655), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/175 (73%), Positives = 145/175 (82%) Query: 231 LEQLRAGLAHPERHQLYVLDVTDHGALQEAAQDFLAVAGGIDVVIANAGISQGTLTEYAE 290 LE LRA L H ERH++Y LDVTDH AL AA F+ GG DVVIANAGISQGTLTE+ E Sbjct: 47 LEALRAALPHAERHRVYALDVTDHAALAAAATSFMDEFGGADVVIANAGISQGTLTEFQE 106 Query: 291 DIPVFERIIATNVTATVATFHPFIAAMKDQMKARPQDCRLVGIGSVAGIRGLPGAEAYSA 350 D+ FERI+A NVTAT ATF PF+A MK +A+ + CRLVGIGSVAGIRGLPGA AYSA Sbjct: 107 DLAAFERILAVNVTATFATFTPFVARMKASPEAQRRRCRLVGIGSVAGIRGLPGAGAYSA 166 Query: 351 SKAAVISYCESLRIELRASGIKVVTIAPGYIDTPMTQVNHYRMPFLMPVQKFEGQ 405 SK+AVISYCESLR+ELRASGIKVVTIAPGYIDTPMT+VN YRMPFLMPV++F + Sbjct: 167 SKSAVISYCESLRVELRASGIKVVTIAPGYIDTPMTRVNTYRMPFLMPVERFAAR 221 >gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 11/149 (7%) Query: 239 AHPERHQLYVLDVTDHGALQEAAQDFLAVAGGIDVVIANAGISQGT--LTEYAEDIPVFE 296 A P R Q +D+TD A+ +AAQ+ LA G ID +I NAG + T L EY D+ + Sbjct: 49 ASPYRQQ--SIDITDAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEY--DVGEWH 104 Query: 297 RIIATNVTATVATFHPFIAAMKDQMKARPQDCRLVGIGSVAGIRGLPGAEAYSASKAAVI 356 RI+ N+ + FH + AR R+V I S+AG G P A AYSA+KA V+ Sbjct: 105 RIVQVNL---LGVFHACRSVTPAMRAARRG--RIVNIASLAGKEGTPNASAYSAAKAGVL 159 Query: 357 SYCESLRIELRASGIKVVTIAPGYIDTPM 385 + +SL EL SG+ V IAP + T + Sbjct: 160 ALTKSLGKELAESGVLVNAIAPAAVKTAL 188 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 14/151 (9%) Query: 241 PERHQLYVLDVTDHGA----LQEAAQDFLAVAGGIDVVIANAGISQGTLTEYAEDIPVFE 296 PE + VL+V D A +++ +DF G + +++ NAGI+Q L +D ++ Sbjct: 57 PEAGRGAVLNVNDAEASVALVEQVQKDF----GSLSILVNNAGITQDQLAMRMKD-EEWD 111 Query: 297 RIIATNVTATVATFHPFIAAMKDQMKARPQDCRLVGIGSVAGIRGLPGAEAYSASKAAVI 356 +IATN+TA V A ++ MKAR R++ I SV G G PG Y+A+KA V Sbjct: 112 SVIATNLTA-VGRLSR--AVLRGMMKART--GRIINITSVVGEAGNPGQMNYAAAKAGVA 166 Query: 357 SYCESLRIELRASGIKVVTIAPGYIDTPMTQ 387 +L E+ + I V +APG+IDT MT+ Sbjct: 167 GMSRALAREIGSRNITVNCVAPGFIDTDMTR 197 >gi|300310391|ref|YP_003774483.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 283 Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 227 RRDMLEQLRAGLAHPERHQLYVLDVTDHGALQEAAQDFLAVAGGIDVVIANAGISQGTLT 286 R ++LE++ AG AHPE + LDV H A ++ + GG+D++I A + + Sbjct: 71 RAEVLEEV-AG-AHPEAF-IAPLDVLCHDAWRDQHARIVEAFGGVDLLIFCAARYRPERS 127 Query: 287 -EYAEDIPVFERIIATNVTATVATFHPFIAAMKDQMKARPQDCRLVGIGSVAGIRGLPGA 345 E ED E I TN+ + + AA+ D + LV SVAG GLPGA Sbjct: 128 WEVQEDEA--EHTIRTNLASVYSALG---AALPDMLARGSGGIALVA--SVAGYVGLPGA 180 Query: 346 EAYSASKAAVISYCESLRIELRASGIKVVTIAPGYIDTPMTQVNHYRMPFLMPVQK 401 Y KAA+I+ E L +LR G+ V + PG++ T +T N + MP L Q+ Sbjct: 181 TVYGPGKAALINLAEILYSDLRPKGVNVYLVNPGFVKTDLTDKNDFTMPALQTPQQ 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,498,752 Number of extensions: 62965 Number of successful extensions: 298 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 19 Length of query: 464 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 375 Effective length of database: 1,198,455 Effective search space: 449420625 Effective search space used: 449420625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)