BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0008.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase [Herbas...   232   3e-62

>gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 577

 Score =  232 bits (591), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/134 (88%), Positives = 124/134 (92%)

Query: 29  PGRPXGDVDDIESIRRFAVAYLRREQDLDLQAFGVRFDNYYLESSLYTEGKVAAAVDALI 88
           P    G+VDDIESIRRFAVAYLR EQDLDLQAFGV+FDNYYLESSLY +GKVAAAVDALI
Sbjct: 227 PVTGSGEVDDIESIRRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALI 286

Query: 89  KAGKTYELDGALWLKTTDYGDDKDRVMKKGDGTYTYFVPDVAYHITKWQRGFGKVINIQG 148
            AGKTYE DGALWL+TTDYGDDKDRVMKK DGTYTYFVPDVAYHI KWQRG+GKVINIQG
Sbjct: 287 AAGKTYEQDGALWLRTTDYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQG 346

Query: 149 SDHHGTIARVRAGL 162
           SDHHGTIARVRAGL
Sbjct: 347 SDHHGTIARVRAGL 360



 Score =  162 bits (409), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 83/89 (93%)

Query: 162 LXTPREVSLLAKLAEYPEALAHALQELGPHQVAFYLRDLAGELHSYYNAERVLVDDVPTR 221
           L  PRE +LLAKLAEYP+ LAHALQELGPHQVAFYLRDLAGELHSYYNAERVLVDDVPTR
Sbjct: 489 LTAPREATLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERVLVDDVPTR 548

Query: 222 MARLALMSATRQVLRNGLALIGVSAPTRM 250
            ARLAL+SATRQVLRNGLAL+GVSAP RM
Sbjct: 549 SARLALLSATRQVLRNGLALLGVSAPARM 577


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 844,902
Number of extensions: 35550
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)