BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0005.p
         (464 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313640|ref|YP_003777732.1| primosomal protein N' [Herbaspi...   586   e-168

>gi|300313640|ref|YP_003777732.1| primosomal protein N'
           [Herbaspirillum seropedicae SmR1]
          Length = 708

 Score =  586 bits (1510), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/317 (87%), Positives = 306/317 (96%)

Query: 1   VHVVSLHSGLAEGERTLSWLAAHQGQARIVLGTRLAILSSLPHLKLIVIDEEHDPSYKQQ 60
           ++VV+LHSGLAEGER  +WLAAH GQA+IVLGTRLAIL+SLP LKLIVIDEEHDPSYKQQ
Sbjct: 248 LNVVALHSGLAEGERARNWLAAHLGQAQIVLGTRLAILASLPALKLIVIDEEHDPSYKQQ 307

Query: 61  EGLRYSARDLAVWRAHQLAIPVVLGSATPSLETWQHAQAGRYRKLQLRERAVRDAVLPKV 120
           EGLRYSARDLAVWRAHQL IPVVLGSATPSLETWQHAQAGRYR+L+LR+RA R+AVLP V
Sbjct: 308 EGLRYSARDLAVWRAHQLGIPVVLGSATPSLETWQHAQAGRYRRLELRQRAAREAVLPTV 367

Query: 121 KMIDMERDRPNDGLTSTLVAALKLRLERGEQSLLFLNRRGYAPVLNCDACGWISNCMRCT 180
           K+ID+ERD+P DGLT+TL+AA++ RLE+GEQSLLFLNRRGYAPVL CDACGWISNCMRC 
Sbjct: 368 KVIDLERDKPVDGLTATLIAAVRKRLEQGEQSLLFLNRRGYAPVLACDACGWISNCMRCD 427

Query: 181 SFMVLHKPERRLRCHHCSLELYIPKACPTCGNVDLQPLGRGTQRVEEGLQAMFPEARILR 240
           +FMV+H+PERRLRCHHCSLEL+IP+ACPTCGNVDLQPLGRGTQRVEEGLQA+FPEAR+LR
Sbjct: 428 AFMVVHRPERRLRCHHCSLELHIPRACPTCGNVDLQPLGRGTQRVEEGLQAIFPEARVLR 487

Query: 241 IDADSTRLKGSAQNAFDSVHRGEVDILIGTQMVAKGHDFKRLTLVGVMNPDTALFSHDYR 300
           IDADSTRLKGSAQ+AFDSVHRGEVDILIGTQMVAKGHDFK+LTLVGV+NPDTALFSHDYR
Sbjct: 488 IDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVAKGHDFKKLTLVGVLNPDTALFSHDYR 547

Query: 301 ASERLFAQLMQVAGRAG 317
           ASERLFAQLMQVAGRAG
Sbjct: 548 ASERLFAQLMQVAGRAG 564


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,269,049
Number of extensions: 50454
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 375
Effective length of database: 1,198,455
Effective search space: 449420625
Effective search space used: 449420625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)