BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0074.0007.p (572 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313074|ref|YP_003777166.1| GGDEF domain-containing protein... 552 e-158 gi|300313075|ref|YP_003777167.1| gamma-glutamyltranspeptidase [H... 173 3e-44 gi|300311453|ref|YP_003775545.1| signal transduction containing ... 70 4e-13 >gi|300313074|ref|YP_003777166.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 552 bits (1422), Expect = e-158, Method: Compositional matrix adjust. Identities = 296/529 (55%), Positives = 360/529 (68%), Gaps = 66/529 (12%) Query: 94 QFTRSYARHEAEARLNQLAWQMQDALDRSMGERYSDVKLLSQRPSIRQAKDPERMRAVFN 153 QFTR YAR E E RL QLAWQMQDAL+R M ER D++LL RPSIRQA+DP +RAV Sbjct: 59 QFTRGYARSEVETRLKQLAWQMQDALERGMAEREIDIRLLVSRPSIRQAQDPAHIRAVLE 118 Query: 154 ELQRNVPNYAWIGFATPDGNVLAAANGLLEGQSVEQRPWFQKGQKDFFVGDYHPAVLLEK 213 ELQRNVP+YAWIG A PDG VLAA GLLEG SV +RPWFQ+GQ+ + DYHPAVLLEK Sbjct: 119 ELQRNVPHYAWIGMARPDGTVLAATKGLLEGMSVAERPWFQQGQQTEYAADYHPAVLLEK 178 Query: 214 KLPVMSDPWRF-------------------------------------------VDI--- 227 KLP SDPWRF VD+ Sbjct: 179 KLPPQSDPWRFVDLSMPVLNMQGQMIGVMGMHLSWGWAREIASKLLNPTSSRYDVDVLIV 238 Query: 228 ---ATPIMGPDGQFQGVL-------------GVHLSWTWAX---YLTGFARTGLNSEYTE 268 T I+GP + + G L TW Y+TG+ARTG E + Sbjct: 239 RSDGTVILGPKDMEETKIDTASFRAAQHSSAGGSLIETWPDGRRYVTGYARTGQGGEM-K 297 Query: 269 MKWSVLVRQREQIAMSGFKDLERQVLFVGCIVGLLLMALAFFMTRRLVAPMNALSAALER 328 +KW+V+VRQ E +A+ F+DLER+V+ VG + G +L+ LAF +TRRLVAP+NALSAALE+ Sbjct: 298 LKWTVIVRQPETVALEAFRDLERRVIVVGALAGAVLVLLAFMLTRRLVAPINALSAALEQ 357 Query: 329 RATGDHSAEIPIVSTYYEIQLLSTTLSTMVQREENYLREVRSLNEGLEQRVEDRTRRLHE 388 RA G EIP+V++ E+QLLS+ L TMV+REE YLRE+RSLNE LE+RV +RT RLHE Sbjct: 358 RAAGLQEVEIPLVTSVRELQLLSSALGTMVEREERYLREMRSLNESLEERVVERTSRLHE 417 Query: 389 TAIALQQALDNQRENQIRLEESETELRAILQNAHDAFIAIDEDGMVLEWNRQAEQLLGWA 448 TA ALQQALD Q+ NQI+LEES ELRAIL+NA DAFIA DE G ++EWNRQAE LLGW Sbjct: 418 TATALQQALDQQQTNQIQLEESAAELRAILENAQDAFIAADEHGHIVEWNRQAELLLGWP 477 Query: 449 HKEAVGKELAELIIPFEQRELHRRGMTHFLNTGEGVVINNRIEINALRRDGKELPIEMTV 508 +G+ +AELIIP + R H GM FL G VVINNRIE+ AL RDG ELP+E+TV Sbjct: 478 RDTVMGRSMAELIIPSDMRAAHNHGMAQFLKDGTSVVINNRIELQALHRDGHELPVEITV 537 Query: 509 GYVRRRAGHLFIAFLHDITERQAFRNSLQEMALTDILTGLPNRRAFTEK 557 G+V+R++GHLFIAFLHDITER AFR+ ++E+ALTD+LT LPNRRAF+++ Sbjct: 538 GHVKRQSGHLFIAFLHDITERLAFRDQMRELALTDVLTSLPNRRAFSDR 586 >gi|300313075|ref|YP_003777167.1| gamma-glutamyltranspeptidase [Herbaspirillum seropedicae SmR1] Length = 527 Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 83/102 (81%), Positives = 91/102 (89%), Gaps = 2/102 (1%) Query: 1 LQPGKLPFHTLNPSLARLNDGRTLAYGTMGGEGQPQTQAAVFSRHILFGQNMQAAVSAPR 60 LQPGKLPFHTLNPSLA+L+DGRTLA+GTMGGEGQPQTQAAVF+RH+LFGQN+QAAVSAPR Sbjct: 394 LQPGKLPFHTLNPSLAQLDDGRTLAFGTMGGEGQPQTQAAVFTRHVLFGQNLQAAVSAPR 453 Query: 61 WLLGRTWGTVSTNLKLEGRIPSDVVEALRRAG--XQFTRSYA 100 WLLGRTWG VSTNLKLEGRIP ++ALRRAG Q YA Sbjct: 454 WLLGRTWGDVSTNLKLEGRIPEATIQALRRAGHEVQVVDDYA 495 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 10/141 (7%) Query: 417 ILQNAHDAFIAIDEDGMVLEWNRQAEQLLGWAHKEAVGKELAELIIPFEQRELHRRGMTH 476 IL H++ I +D G + WNR AEQL G++ EA+G+ ++ +E + Sbjct: 127 ILNQMHESVITMDPAGFITSWNRGAEQLFGYSAMEAIGR---NVLFLYENEDEEDSLHDL 183 Query: 477 FLNTGEGVVINNRIEINALRRDGKELPIEMTVGYVRRRAGHL--FIAFLHDITERQAFRN 534 FL G +E+ ++ G+ +++ +R + GH I +L+DITER+ Sbjct: 184 FLEHG-----GREMEVRRRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEK 238 Query: 535 SLQEMALTDILTGLPNRRAFT 555 + +A D LTGLPNR T Sbjct: 239 LIHHLAYYDALTGLPNRTLLT 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,781,031 Number of extensions: 74857 Number of successful extensions: 320 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 4 Length of query: 572 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 482 Effective length of database: 1,193,720 Effective search space: 575373040 Effective search space used: 575373040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)