BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0074.0004.p
         (615 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313073|ref|YP_003777165.1| potassium-transporting ATPase s...   909   0.0  

>gi|300313073|ref|YP_003777165.1| potassium-transporting ATPase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/567 (82%), Positives = 503/567 (88%), Gaps = 7/567 (1%)

Query: 23  GWYIARVMEGKSAVNRVFGGIEHFLYRLCGVRADADMGWKQYALALLLFNIVGLFAVYAL 82
           GWY+ARVMEGKS VNR+FGGIE   YRLCG+  + +M WKQYA+A++LFN +G  AVY L
Sbjct: 24  GWYMARVMEGKSRVNRLFGGIERVFYRLCGISREHEMDWKQYAIAVVLFNFIGAIAVYLL 83

Query: 83  QRLQVWLPLNPAGMASVSADSSFNTAVSFVTNTNWQGYAGESTMSYLTQMLALSVQNFLS 142
           QRLQ WLPLNPA +ASVS DSSFNTA+SFVTNTNWQGYAGESTMSYLTQM AL++QNFLS
Sbjct: 84  QRLQQWLPLNPAALASVSPDSSFNTALSFVTNTNWQGYAGESTMSYLTQMAALALQNFLS 143

Query: 143 AATGIAVAFALIRGFVRHSSKSIGNFWVDMTRSGLYVLLPLSVLVAVVLMSQGVIQNFKS 202
           AATGIA+AFALIRGF RHSSK IGNFWVDMTRS LYVLLPLSV++A+VL+ QG IQNF++
Sbjct: 144 AATGIAIAFALIRGFARHSSKGIGNFWVDMTRSTLYVLLPLSVVLALVLVQQGSIQNFRA 203

Query: 203 YVEVSTLETTVYTTPRLDAQGQPLKDEKGAPLVDEMKTGKQTLPMGPVASQEAIKMVGTN 262
           Y +V TLE T YT P+LDA GQPLKD KG P+ +   T KQTLPMGPVASQEAIKM+GTN
Sbjct: 204 YQDVKTLEVTHYTVPKLDAAGQPLKDAKGEPVTEAQSTDKQTLPMGPVASQEAIKMIGTN 263

Query: 263 GGGFFNANSAHPYENPTPLSNFVQMLAILIIPAALCTSFGVLVGDCRQGWVILAAMTLLF 322
           GGGFFNANSAHPYENPTPLSNF+QMLAILIIPAALCTSFGVLVGD RQGW ILAAMTLLF
Sbjct: 264 GGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCTSFGVLVGDRRQGWAILAAMTLLF 323

Query: 323 IVMTLTVMYFEQQPNPALAVAHATQGSGMMEGKETRFGIIASSLFAAITTAASCGAVNAM 382
           +VMTL +MY E QPNP LA  HA+ G GMMEGKETRFGI AS+LFA+ITTAASCGAVNAM
Sbjct: 324 VVMTLVLMYAESQPNPMLASLHAS-GPGMMEGKETRFGIPASALFASITTAASCGAVNAM 382

Query: 383 HDSLSPLGGLVPMLQMQLGEVVYGGVGAGLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIG 442
           HDSLSPLGGLVPMLQMQLGEVV+GGVG+GLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIG
Sbjct: 383 HDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIG 442

Query: 443 VFDMKMMSIAILMTPALVLVLTAISVMVENGLAGIANPGAHGFSEILYAFSSAANNNGSA 502
           VFDMKMMSIAILMTPALVL+ TA+SVMVE GLAGIANPGAHGFSEILYAFSSAANNNGSA
Sbjct: 443 VFDMKMMSIAILMTPALVLIFTALSVMVEAGLAGIANPGAHGFSEILYAFSSAANNNGSA 502

Query: 503 FAGLSANTPYYNVMTGIAMWLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVAL 562
           FAGLSANTPYYN+ TGI  WLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVAL
Sbjct: 503 FAGLSANTPYYNITTGICTWLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVAL 562

Query: 563 LIGAVXTLPKKLLPRLLQYLPRLPYLP 589
           LIGAV      +L   L Y+P L   P
Sbjct: 563 LIGAV------ILVGALTYVPALALGP 583


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,600,222
Number of extensions: 61972
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,188,985
Effective search space: 623028140
Effective search space used: 623028140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)