BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0074.0001.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313071|ref|YP_003777163.1| K+ transporting ATPase subunit ...   229   8e-62

>gi|300313071|ref|YP_003777163.1| K+ transporting ATPase subunit C
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  229 bits (585), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 151/185 (81%)

Query: 5   LRPAISLFILMSLILGGLYPAVITLVGPFFFPTQANGSVIVRDGVPVGSELIGQNFTEPK 64
           LRPAI+LFIL+ ++LGGLYP ++T +   FFP QANGS+I R G  VGS LIGQNFT P 
Sbjct: 9   LRPAITLFILLGVLLGGLYPLLVTGLAQAFFPQQANGSLIERQGQVVGSALIGQNFTSPA 68

Query: 65  YFWGRLSSSGTFPYNAGASGGSNFGPLNPALVDAAKAREEALRAADPGAGREIPVDLLTS 124
           YFWGR S++GTFP N  ASGGSN GP NPAL  AA+ R +ALR ADP   R+IP+DLLT+
Sbjct: 69  YFWGRPSAAGTFPDNGMASGGSNLGPTNPALKQAAEERAKALREADPQNRRDIPIDLLTA 128

Query: 125 SGSGLDPHISPAAAAYQVARVAKARGLSLERVRSLVKGQTEAPQWGLFGEPRVNVLKLNL 184
           S SGLDPHISPAAA +Q ARVA+ RG+++E+VR+L++  +EAPQWGLFGEPRVNVLKLNL
Sbjct: 129 SASGLDPHISPAAADFQAARVARERGMTVEQVRALIRVNSEAPQWGLFGEPRVNVLKLNL 188

Query: 185 ALDAA 189
           ALDAA
Sbjct: 189 ALDAA 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,309
Number of extensions: 23198
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)