BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0002.p (611 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 716 0.0 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 147 3e-36 gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter perip... 99 1e-21 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 92 1e-19 gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip... 91 2e-19 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/382 (88%), Positives = 365/382 (95%) Query: 107 QTLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVENNYNKLQPGLAASWKNIDAKTWE 166 Q LNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLV+N+YNKL PGLA SWKNID KTWE Sbjct: 29 QNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQNDYNKLVPGLAVSWKNIDPKTWE 88 Query: 167 FKLRPNVKWQDGKPFTAEDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLIIKTN 226 FKLRPNVKWQDGKPFTA+DVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTL+IKTN Sbjct: 89 FKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLVIKTN 148 Query: 227 IANPDLPLNLASVHIVSKHVGEKSQTENYNSGSAMVGSGPYKYVSYTPGDRVVMERNNDY 286 I NPDLPLNLASVHIVSKH+GEKS TENYNSG+A++G+GPYK+VSYTPGDRVVM+RN+DY Sbjct: 149 IPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDY 208 Query: 287 WGQKQIWEKVNYRYINNAAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVFPYNGLRV 346 W K +WEKVNYRYINN AARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKV+PYNGLRV Sbjct: 209 WNGKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRV 268 Query: 347 LLLQPTFHEGPNQYITDNAGKQLDKNPLLDARVRKALSLAINRKALVDRILQGAATEANQ 406 LL+QP+FH+GP+ +ITDN GKQLDKNPLLD RVR+A+SLAINRKAL+DRILQGAATEANQ Sbjct: 269 LLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQ 328 Query: 407 WMPADTFGYNPDIKNIPNDVAQAKKLLADAGFPQGFKLTIHVPNDRYPQAPETMQAVAQF 466 WMPADTFGYNP+IKNIP D AQAKKLLADAGFP GFKLTIHVPNDRYPQAPETMQAVAQF Sbjct: 329 WMPADTFGYNPEIKNIPFDAAQAKKLLADAGFPDGFKLTIHVPNDRYPQAPETMQAVAQF 388 Query: 467 WTRIGVKTQVEVLPWASYSARG 488 WTRIG+KTQVEVLPWA+YS+R Sbjct: 389 WTRIGIKTQVEVLPWAAYSSRA 410 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 147 bits (370), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 1/102 (0%) Query: 1 LLAPSMGEVLVDGVDRKDFSAQDTQAARRKVQMIFQNPYASLNPRLRVDQIVGEAALIHG 60 LL PS G+VLV+G DR S+++ AR +VQMIFQNPYASLNPRLR+DQIVGEAA ++G Sbjct: 78 LLDPSDGQVLVNGRDRASLSSREEAEARLQVQMIFQNPYASLNPRLRIDQIVGEAAQVNG 137 Query: 61 MADKAGLDDYVSAQLLRAGLDPELRDRYPHQFSGGQRQRIGI 102 + LDDYV QLLRAGLDP LRDRYPHQFSGGQRQRIGI Sbjct: 138 KVE-GDLDDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGI 178 >gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] Length = 540 Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 117/250 (46%), Gaps = 12/250 (4%) Query: 93 SGGQRQRIGIXAGAQTLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVENNYNKLQPG 152 SG + G G + + +LDP H+ D + F++ L + + KL P Sbjct: 54 SGSVMAQTGKRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLD-GKLGPQ 112 Query: 153 --LAASWKNIDAKTWEFKLRPNVKWQDGKPFTAEDVIFSYQRARAVPGSVATFAGYLRTV 210 LA DA TW KLR V + DGKP T DV++S R + P + + Sbjct: 113 MVLAEEMLTNDAVTWTVKLRKGVNFHDGKPLTPADVVYSIMRHKD-PATASKVKVVADQF 171 Query: 211 ESVTAKDPLTLIIKTNIANPDLPLNLASVHIVSKHVGEKSQTENYNSGSAMVGSGPYKYV 270 ESV A P + IK AN DLP+ LA+ + G T N+++ + G+G +K Sbjct: 172 ESVKATGPNEVQIKLTSANADLPVILATAQFLIIRDG----TTNFSTPN---GTGAFKLK 224 Query: 271 SYTPGDRVVMERNNDYWGQKQIW-EKVNYRYINNAAARTAALLSGDVDVIDKVSVSDLAK 329 +TPG R + RN +YW + ++V I + AAR ALLSGDV I+ V+ + Sbjct: 225 EFTPGVRTIGVRNENYWKPGLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNSRSTGR 284 Query: 330 LKQSPNVKVF 339 +K +P V Sbjct: 285 VKNTPGYTVM 294 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 75/133 (56%), Gaps = 6/133 (4%) Query: 7 GEVLVDGVDRKDFSAQDTQAARRKVQMIFQNPYASLNPRLRVDQIVGEAALIHGMADKAG 66 G+V G D + + RR +Q IFQ+P+ASL+PR+ V + E L+HGM K G Sbjct: 378 GKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM--KEG 435 Query: 67 LDDYVSAQLLRAGLDPELRDRYPHQFSGGQRQRIGIXAGAQTLN--IAFADP-LSSLDPQ 123 + V A L R GL PE RYPH+FSGGQRQRI I A A LN I AD +S+LD Sbjct: 436 AQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICI-ARALALNPKIVIADESVSALDVS 494 Query: 124 LNNHAGDRSVDLH 136 + + +DL Sbjct: 495 IQAQIVNLMLDLQ 507 >gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 165/376 (43%), Gaps = 40/376 (10%) Query: 123 QLNNHAGDRSVDLHF-WDLLVENN--YNKLQPGLAASWKNIDAKTWEFKLRPNVKWQDGK 179 Q +N+ + + H WD L+ + N+ +P LA +WK LR V++Q+G Sbjct: 49 QYHNNLREGVILAHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGD 108 Query: 180 PFTAEDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLT-LIIKTNIANPDLPLNLAS 238 F+A+DV+F++ A + T + + + + D L ++ N+ P P L Sbjct: 109 KFSADDVVFTFNYAVSPESKAVT----RQNTDWIKSVDKLADYKVRINLKGP-FPAALEY 163 Query: 239 VH----IVSKHVGEKSQTENYNSGSAMVGSGPYKYVSYTPGDRVVMERNNDYW-----GQ 289 + I +K E ++ A +G+GPYK S TPG V + +N Y+ GQ Sbjct: 164 LAGPLPIYPAAYFKKVGLEGFSK--APIGTGPYKVTSVTPGQGVTLVKNPGYFKDSPQGQ 221 Query: 290 KQIWEKVNYRYINNAAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVFPYNGLRVLLL 349 I + + I + R A L++G +D I +V LK +P + V +R+ + Sbjct: 222 PTI-GNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGETMRIGFI 280 Query: 350 QPTFHEGPNQYITDNAGKQLDKNPLLDARVRKALSLAINRKALVDRILQGAATEANQWMP 409 D G +P D RVR+A++ AINRK D +++G + Sbjct: 281 -----------TLDTTGTSAPNSPFKDVRVRQAVNHAINRKGYADNLMRGGSQPVYTACF 329 Query: 410 ADTFGY--NPDIKNIPNDVAQAKKLLADAGFPQGFKLTIHVPNDRYPQAPETMQAVAQFW 467 FG N IK N + L A AG+P GF I+ +R E +A+ Sbjct: 330 RTQFGCDSNAAIKYDYNPAKAKELLAA-AGYPNGFDTDIYAYRER-----EIAEAIIGDL 383 Query: 468 TRIGVKTQVEVLPWAS 483 ++G++ ++ + +A+ Sbjct: 384 RKVGIRARLHYMKFAA 399 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,843,794 Number of extensions: 72962 Number of successful extensions: 290 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 11 Length of query: 611 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 520 Effective length of database: 1,188,985 Effective search space: 618272200 Effective search space used: 618272200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)