BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0071.0005.p (309 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312373|ref|YP_003776465.1| LysR family transcription regul... 145 5e-36 gi|300312300|ref|YP_003776392.1| LysR family transcription regul... 113 2e-26 gi|300310059|ref|YP_003774151.1| LysR family transcription regul... 108 5e-25 gi|300312785|ref|YP_003776877.1| transcription regulator protein... 100 1e-22 gi|300310322|ref|YP_003774414.1| LysR family transcription regul... 97 2e-21 >gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 145 bits (365), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 106/175 (60%) Query: 27 FDWNDLQAFLAVVRAGRLTVAARRIGIDHSTLSRRIAGLEESLGVALFDRRSAGYALTVE 86 DW++L+ FL + R+ L AA+++GIDHST+SRR+ EE +G LFDR + GY LT + Sbjct: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 Query: 87 GERLIPEAEAMESLAVRIHARQDDPAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRHPEL 146 G RL+ AE +ES L+G +R+G E +GT+ LAP ++ R+P + Sbjct: 62 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 121 Query: 147 EVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAAREQAGGEP 201 V+++ PR +LSK EADI+VS+ RP G +L+DY L +YA+R+ P Sbjct: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHP 176 >gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 99/178 (55%), Gaps = 5/178 (2%) Query: 16 QKIAYGNTMNKFDWNDLQAFLAVVRAGRLTVAARRIGIDHSTLSRRIAGLEESLGVALFD 75 + MN W+D++ FL + R G L+ +AR + ++HST++R + LE++L V LFD Sbjct: 12 HSVCINTPMNTLQWDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFD 71 Query: 76 RRSAGYALTVEGERLIPEAEAMESLAVRIHA--RQDDPAQGLTGSIRIGTPEAWGTYFLA 133 R + G+ LT EG L +AE +E V +H+ R L+G +R+ P + FL Sbjct: 72 RLARGWVLTTEGAELSKQAEQLE---VEMHSLWRAALANTTLSGKVRVSAPPILMSDFLV 128 Query: 134 PQLSLLAQRHPELEVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIY 191 P+L +++P++E+E+I R L++ EADIA+ M P L AR L + +Y Sbjct: 129 PRLPAFQEKYPDIELEVIGEARGVDLTRGEADIALRMGEPVSPLLVARMLCNVSYSVY 186 >gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 108 bits (270), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 99/181 (54%), Gaps = 7/181 (3%) Query: 28 DWNDLQAFLAVVRAGRLTVAARRIGIDHSTLSRRIAGLEESLGVALFDRRSAGYALTVEG 87 DW L++F A V AG + AAR +G+ H+T+ RR+ LE++L LF RR+ LT G Sbjct: 4 DWESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELTRLG 63 Query: 88 ERLIPEAEAMESLAVRIHARQDDPAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRHPELE 147 E ++ A AM+ ++ + G +R+ +A GT FLAP+L L Q+ P L+ Sbjct: 64 ESVLAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWPALD 123 Query: 148 VELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLND---YELG----IYAAREQAGGE 200 +EL + SL++READ+A+ RP+ G L ARRL Y G + A R Q G Sbjct: 124 IELAMGHQTLSLARREADLALRFARPQDGELIARRLGVVRFYLCGTADQVAAWRHQRGSA 183 Query: 201 P 201 P Sbjct: 184 P 184 >gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 97/190 (51%) Query: 28 DWNDLQAFLAVVRAGRLTVAARRIGIDHSTLSRRIAGLEESLGVALFDRRSAGYALTVEG 87 +W ++FL V+ G L+ A R +G+ T+ R I LE +LG+ LF R G++ T Sbjct: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 Query: 88 ERLIPEAEAMESLAVRIHARQDDPAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRHPELE 147 L P A A+ + + + + + G++R+ E L P L+ L RHPEL Sbjct: 67 LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126 Query: 148 VELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAAREQAGGEPANKXPV 207 VEL+ + + L +READIAV M RP Q L A+RL ELG++A + A K Sbjct: 127 VELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLTVHGAPKSVD 186 Query: 208 ALFDRRSAGY 217 AL D G+ Sbjct: 187 ALADHTLIGF 196 >gi|300310322|ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 105/216 (48%), Gaps = 8/216 (3%) Query: 27 FDWNDLQAFLAVVRAGRLTVAARRIGIDHSTLSRRIAGLEESLGVALFDRRSAGYALTVE 86 DW++ + FLA+ R G L AA + +D +T+ RR+A LE SLG LF R GY T Sbjct: 1 MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60 Query: 87 GERLIPEAEAMESLAVRIHARQDDPAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRHPEL 146 GE A+ ME A ++ + + L G +R+ + +FL P L L Q HP + Sbjct: 61 GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120 Query: 147 EVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAAREQAG-------G 199 V L + ++ +L+KREADIAV RP+ L AR L IYA+R G Sbjct: 121 RVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPG 180 Query: 200 EPANKXPVALFDRR-SAGYALTVEGERLIPEAEAME 234 V ++ R S + + GE +I AME Sbjct: 181 TGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAME 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,026,994 Number of extensions: 44247 Number of successful extensions: 299 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 55 Length of query: 309 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 224 Effective length of database: 1,217,395 Effective search space: 272696480 Effective search space used: 272696480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)