BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0070.0005.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312234|ref|YP_003776326.1| argininosuccinate lyase [Herbas...    82   4e-17

>gi|300312234|ref|YP_003776326.1| argininosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 464

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 74/120 (61%)

Query: 147 YLQYEPLILAIAGPDGSRMHSGRSRQDILSTNRRLMQRERTLDLMEAMNKSKAEVLELAE 206
           +L  E  +  + G  G R+H+GRSR D ++T+ RL  R    D++  + + +  +L+LAE
Sbjct: 92  HLNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLYMRGAVDDIIGLLRELRLALLDLAE 151

Query: 207 KNLDTIVPAYTNGVQAQPTTFAHYLLAFSSAFGRDSARLQESYARLNLSPLGAXLACRTT 266
           ++ DTI+P +T+   AQP TF H++LA+   FGRD+ R+ ++  R+N  PLGA     TT
Sbjct: 152 QHADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDAERMIDARKRINRLPLGAAALAGTT 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 653,522
Number of extensions: 22583
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)