BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0070.0003.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport tran...   122   2e-29
gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport tran...   102   2e-23
gi|300313118|ref|YP_003777210.1| proton glutamate symport protei...    72   3e-14

>gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  122 bits (307), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 98/146 (67%)

Query: 74  AHYAARLSTSGVTDFLLNIIPNSFFEAFTRNSSLQILLLAVLFGVALSRLGERGRSLLNF 133
           A Y A      VTDF+L IIP S  +AF +   LQ+LL+AVLFG AL + G RG  + +F
Sbjct: 121 AAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDF 180

Query: 134 IEANLRILFGMINIILKVAPLAAFGAMAYTIGRYGVASVLPLLHFVGAIYIASIAFVCVV 193
           IE    +LF ++  I+KVAP+ AFGAM++TIG+YGV S+  L   +G  Y+  + F+ VV
Sbjct: 181 IEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVV 240

Query: 194 MGLIARVAGVNIFRLIAFIKEELLLV 219
           +G+I R+ G +I++ + +IKEELL+V
Sbjct: 241 LGIITRLHGFSIWKFVKYIKEELLIV 266


>gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  102 bits (255), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 97/158 (61%)

Query: 63  SKLDLSHVSDGAHYAARLSTSGVTDFLLNIIPNSFFEAFTRNSSLQILLLAVLFGVALSR 122
           S LD S +S     A ++  +G  +F++ +IP +   AFT    LQ+LL++V FG AL  
Sbjct: 110 SNLDASSLSGYMANAGKVKETGFAEFIMKLIPATAVSAFTSGDVLQVLLISVTFGCALLL 169

Query: 123 LGERGRSLLNFIEANLRILFGMINIILKVAPLAAFGAMAYTIGRYGVASVLPLLHFVGAI 182
           +GE+G  ++  + +     F  ++  +++APL   GA+A+T+G+YG+ S+  L   V   
Sbjct: 170 IGEKGAPVVALVASLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLVLLF 229

Query: 183 YIASIAFVCVVMGLIARVAGVNIFRLIAFIKEELLLVF 220
           Y A I FV VV+G I R +G++IF+LI +++EEL++V 
Sbjct: 230 YGAVIFFVLVVLGGILRASGLSIFKLIRYLREELVVVL 267


>gi|300313118|ref|YP_003777210.1| proton glutamate symport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 72.4 bits (176), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 2/145 (1%)

Query: 78  ARLSTSG--VTDFLLNIIPNSFFEAFTRNSSLQILLLAVLFGVALSRLGERGRSLLNFIE 135
           A L+TS   V +F  +++P S  EA  +N  LQ+++ ++ FG+AL+ LGERG+ LL  I+
Sbjct: 122 AGLATSKFTVKEFFNHLVPKSIVEAMAQNEVLQVVVFSMFFGIALASLGERGKHLLAVID 181

Query: 136 ANLRILFGMINIILKVAPLAAFGAMAYTIGRYGVASVLPLLHFVGAIYIASIAFVCVVMG 195
                +  +   ++K AP+A F AMA T+   G+  ++    F+   Y + +    +++ 
Sbjct: 182 DLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLEILVSFAVFMRDFYFSLVLLWVILIA 241

Query: 196 LIARVAGVNIFRLIAFIKEELLLVF 220
           +        IF L+A IKE  LL F
Sbjct: 242 VGFIFLKKRIFHLLALIKEAFLLAF 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 641,346
Number of extensions: 22446
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)