BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0002.p (164 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 91 3e-20 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 91 4e-20 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 90 1e-19 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 89 2e-19 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 87 8e-19 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 91.3 bits (225), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 82/137 (59%), Gaps = 8/137 (5%) Query: 19 GFGYTLAYTVACVLLGLLLGLLVGLGRLSTNPFISGPLRAYVEVFRCTPVLVQLVWFYYA 78 G +TL T + + G++LG L+ + RLS+N +S YV + R P+++ + WFY+ Sbjct: 21 GLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVLVIFWFYFL 80 Query: 79 LPV----LVG----IEMSAGTSALLALALYGGAFYSEIIRGGIVSIDVGQSEAGCALGMT 130 +P ++G I++ A SAL+ L+ A+Y EI+R GI SI GQ AG A+GM Sbjct: 81 VPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMN 140 Query: 131 RFQLMRRVILPQAFKRM 147 +Q+M V+LPQAF+ M Sbjct: 141 YWQMMGNVVLPQAFRNM 157 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 91.3 bits (225), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 86/152 (56%), Gaps = 27/152 (17%) Query: 23 TLAYTVACVLLGLLLGLLVGLGRLSTNPF----------ISGPLRAYVEVFRCTPVLVQL 72 TL + CV+ G GL++G+GRL+ + P+R YV R TP+ VQ+ Sbjct: 24 TLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQWPIRFYVSFLRGTPLFVQI 83 Query: 73 VWFYYAL-PVLV----GIEMS------------AGTSALLALALYGGAFYSEIIRGGIVS 115 + ++AL P+L+ G+ +S A SA+LA+ L GA+ SEI R GI S Sbjct: 84 LLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITLNSGAYVSEIFRAGIQS 143 Query: 116 IDVGQSEAGCALGMTRFQLMRRVILPQAFKRM 147 ID GQSEA +LGM+ +RRV+LPQAF+RM Sbjct: 144 IDRGQSEASRSLGMSYLATLRRVVLPQAFRRM 175 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 87/145 (60%) Query: 3 HWDFAALWQFRNVIAVGFGYTLAYTVACVLLGLLLGLLVGLGRLSTNPFISGPLRAYVEV 62 +DF+ + + G T+ T A ++ G L+GLL GL R N + G YVE Sbjct: 2 DFDFSVITDSLPALLEGAKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVEF 61 Query: 63 FRCTPVLVQLVWFYYALPVLVGIEMSAGTSALLALALYGGAFYSEIIRGGIVSIDVGQSE 122 R TP++VQ+++ Y+ALPVL+GI + T+A+ ++ + GA+ +EI+RG +S+ G E Sbjct: 62 VRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLSVPRGLRE 121 Query: 123 AGCALGMTRFQLMRRVILPQAFKRM 147 AG ALG+ ++++ VI P A +RM Sbjct: 122 AGLALGLPVWRVLAFVIGPVAIRRM 146 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 1/137 (0%) Query: 9 LWQFRNVIAVGFGYTLAYTVACVLLGLLLGLLVGLGRLSTNPFISGPLRAYVEVFRCTPV 68 L Q +A G GYTL + +A +L GL+LG ++ + R+ I P YV + R TP+ Sbjct: 9 LQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPL 68 Query: 69 LVQLVWFYYALPVLVGIEMSAGTSALLALALYGGAFYSEIIRGGIVSIDVGQSEAGCALG 128 LVQ+ YY LP + GIE S T+ +L L+L A+ SE +RG I+ + GQ A ++G Sbjct: 69 LVQIFVVYYGLPGM-GIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVG 127 Query: 129 MTRFQLMRRVILPQAFK 145 +T FQ +R +I+PQA + Sbjct: 128 LTYFQTLRYIIVPQAVR 144 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 87.0 bits (214), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 8/154 (5%) Query: 2 YHWDFAALWQFR-NVIAVGFGYTLAYTVACVLLGLLLGLLVGLGRLSTNPFISGPLRAYV 60 Y +DF+A+ V+ G +L T+ ++ G++ G L+ + RLS + + YV Sbjct: 3 YEFDFSAVTPAALRVLGDGLLVSLKITLVAIVFGMVWGTLLAMMRLSRHSPLQWFAAGYV 62 Query: 61 EVFRCTPVLVQLVWFYYALPVLV----GIEMSAG---TSALLALALYGGAFYSEIIRGGI 113 +FR P+++ L+WF+ +P L+ G+ + TSAL+A AL+ A+Y+EIIR GI Sbjct: 63 NLFRSIPLVMVLLWFFLIVPQLLQKLFGLSPANDLRMTSALVAFALFEAAYYAEIIRAGI 122 Query: 114 VSIDVGQSEAGCALGMTRFQLMRRVILPQAFKRM 147 S+ GQ A ALG+T Q M VILPQAF+ M Sbjct: 123 NSVSRGQMAAAYALGLTYPQAMGMVILPQAFRNM 156 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.145 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 443,375 Number of extensions: 13412 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 19 Length of query: 164 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 86 Effective length of database: 1,250,540 Effective search space: 107546440 Effective search space used: 107546440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)