BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0008.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310416|ref|YP_003774508.1| MocR family transcription regul...   109   1e-25
gi|300311139|ref|YP_003775231.1| MocR family transcription regul...    73   2e-14
gi|300311016|ref|YP_003775108.1| MocR family transcription regul...    64   1e-11

>gi|300310416|ref|YP_003774508.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score =  109 bits (273), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 5/194 (2%)

Query: 20  VIEDDYDSEFRYEGRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRAMSV 79
           +IEDDYDSEFRY GRP+ SLQ MD    V ++GTFSK M P LR+G+++ P S+ RA S 
Sbjct: 321 IIEDDYDSEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFST 380

Query: 80  VKGLSDWH--TPTLTQWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGALKPWMRA 137
             G+++ +       Q  +A F+ EG+   HIR+   +Y  R + L  ++N      M  
Sbjct: 381 --GIAELYRNGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTI 438

Query: 138 VPTTAGFHLAAQMTAEVDMAQLLRLARRVDVALYTLDEFYYRVK-PEPALFFGYGAIESL 196
               AG HL   +  E D   +   A    + +  L  +Y   +     L  GY ++ + 
Sbjct: 439 TGGEAGLHLVLGLPQECDDVLICEQALAAGIVVRPLSRYYMHARGARRGLLLGYASVPND 498

Query: 197 DIETALGRVRTILE 210
           +I  A  ++  +++
Sbjct: 499 EIARAFDKLAAVIK 512


>gi|300311139|ref|YP_003775231.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score = 72.8 bits (177), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 2/199 (1%)

Query: 12  TARELRAIVIEDDYDSEFRYEGRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPP 71
           T   L   +IEDD      Y+  P+  + SM+  G++ ++G+FSK + P +R+GYV+AP 
Sbjct: 197 TCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSGVI-YMGSFSKVLTPGIRLGYVVAPR 255

Query: 72  SILRAMSVVKGLSDWHTPTLTQWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGAL 131
            ++  M   K  +D HT  LTQ  +   I +G+L +H+     +Y  + + +  AL    
Sbjct: 256 PLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYF 315

Query: 132 KPWMRAVPTTAGFHLAAQMTAEVDMAQLLRLA-RRVDVALYTLDEFYYRVKPEPALFFGY 190
                      G  +   +   +D   LL  A  +  VA      FY  V  +  L   +
Sbjct: 316 PASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSF 375

Query: 191 GAIESLDIETALGRVRTIL 209
             +    I   + R+  ++
Sbjct: 376 VTVPPEQIRAGVERLGKLI 394


>gi|300311016|ref|YP_003775108.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 480

 Score = 63.5 bits (153), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 3/196 (1%)

Query: 20  VIEDDYDSEFRYEGRPMDSLQSMDQDGLVAFVGTFSKSMNPELRVGYVIAPPSILRA-MS 78
           VIE+   SE  Y      SL++ D+DGLV    +FSKS+    R+G+ +  P   RA + 
Sbjct: 287 VIENAVYSELYYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAM--PGRYRAQVE 344

Query: 79  VVKGLSDWHTPTLTQWAMARFIDEGYLQKHIRRCHGIYVARREKLHAALNGALKPWMRAV 138
            +K L+   TPT  Q A+A ++ +G  ++H+RR    +  +R+ +   +        +  
Sbjct: 345 KLKFLNTLATPTAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVS 404

Query: 139 PTTAGFHLAAQMTAEVDMAQLLRLARRVDVALYTLDEFYYRVKPEPALFFGYGAIESLDI 198
               G+ L  ++   VD  +L R +  + + +     F    +    +   Y    S + 
Sbjct: 405 EPQGGYVLWVELPQGVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKET 464

Query: 199 ETALGRVRTILEELSG 214
           E AL  V  ++EEL+G
Sbjct: 465 EQALKLVGKLVEELAG 480


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,690
Number of extensions: 23895
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)