BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0005.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309491|ref|YP_003773583.1| cytoplasmic protein [Herbaspiri...    74   2e-15

>gi|300309491|ref|YP_003773583.1| cytoplasmic protein
           [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 58/143 (40%), Gaps = 46/143 (32%)

Query: 1   MEQRVDFYKASPEVLKGMIALENVVGKLGLETSLLELVRLRVSLINGCAFCVDMHTADAR 60
            +QR+   K +      +I    VV + G++  LLELV LRVS +NGCAFCVDMH+ D  
Sbjct: 4   FKQRLPHAKLAAPAFNALIKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCVDMHSHDLL 63

Query: 61  KAGETEAR----------------------------------------------AQFTDA 74
           + GE + R                                                F D 
Sbjct: 64  QKGEDQQRLNTLAAWREIPFFTDAERAALNWAERFTHLHQQDADKEDAAFVQLQQHFNDT 123

Query: 75  ELVNLTLAINTINAWNRFAIGFR 97
           E+ NLT A+  INAWNR  +  R
Sbjct: 124 EIANLTFAVAIINAWNRLGVSMR 146


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 228,867
Number of extensions: 5286
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)