BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0003.p
         (566 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ...   167   3e-42
gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb...   164   2e-41
gi|300310770|ref|YP_003774862.1| hypothetical protein Hsero_1438...    77   5e-15

>gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 98/124 (79%)

Query: 399 LIMIDPKMLELSVYDGIPHLLAPVVTDMKLAAHALSWCVGEMDKRYRLMSALGVRGLAGY 458
           LIMIDPKMLELS+Y+GIPHLLAPVVTDM+ AAHAL+W V EM++RY+ MS LGVR LAGY
Sbjct: 209 LIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEMERRYKKMSKLGVRNLAGY 268

Query: 459 NQKIADGIAAEKRVKNPFSLTPDAPEPLDPLPMIVVVIDELADLXPMIVVVIDELACSCS 518
           NQK+ +  A  +++ NPFSLTPDAPEPL+ LP IV+VIDELADL  ++   ++EL    +
Sbjct: 269 NQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELADLMMVVGKKVEELIARLA 328

Query: 519 CCPR 522
              R
Sbjct: 329 QKAR 332


>gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 780

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 96/124 (77%)

Query: 399 LIMIDPKMLELSVYDGIPHLLAPVVTDMKLAAHALSWCVGEMDKRYRLMSALGVRGLAGY 458
           LI+IDPKMLELS+Y+GIPHLLAPVVTDM+ A HAL+W V EM++RY+ MS LGVR LAGY
Sbjct: 463 LILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGY 522

Query: 459 NQKIADGIAAEKRVKNPFSLTPDAPEPLDPLPMIVVVIDELADLXPMIVVVIDELACSCS 518
           NQKIAD     +++ NPFSLTPDAPEPL+ L  IV++IDELADL  ++   ++EL    +
Sbjct: 523 NQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIA 582

Query: 519 CCPR 522
              R
Sbjct: 583 QKAR 586


>gi|300310770|ref|YP_003774862.1| hypothetical protein Hsero_1438
           [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 125/264 (47%), Gaps = 55/264 (20%)

Query: 3   LFLLDWFGWSFLWMLPLLGRVLLSLLSGKG-LGGRGSIRIWLGTLAILCASSALEAMLRS 61
           +  + WFGWS LW+LPLL R +   L  K   GGRG+IR+W G+L +L AS A+EA++R+
Sbjct: 1   MIFVKWFGWSVLWLLPLLLRTVARALGRKSVFGGRGAIRLWCGSLLLLVASGAIEALIRA 60

Query: 62  Q---GDTALETDLLGQAL--ARNVTLAFGKLVAVLVLMATGMIGLFW--LFGRRKARMDL 114
           Q   GD      L+G AL  A    ++ G  VAV++++    +      LFGR ++    
Sbjct: 61  QLSSGDDGPGAALMGGALLDALGARISRGLAVAVMLVLLALGLKWLLGALFGRARSEERE 120

Query: 115 DA----DIGSLPLQASVPRRTQANIAPTIRNMPAAQ------------------------ 146
           D     D+G  P + S+    +  ++    + PA                          
Sbjct: 121 DHHPELDLGP-PRRGSI-ESERVRMSSLRSSFPAGAERRAPARPVARPAARAPASPFEPR 178

Query: 147 ---SHRTPPAQPKPPAAPAFGNLTRKRDPWPLPNELPRAAHPAHTAAGNWPGAALQKAEP 203
              +  +P A+  P +AP        R+ W +P     A     +  G WP  AL+    
Sbjct: 179 PRPARLSPAAERTPDSAP--------REDWQVPLS---ALTGNGSQRGKWP--ALKPGAQ 225

Query: 204 PKRPARPASEWAAFESLRPTQAML 227
           P +P RP SEWAAFE+LRPT+AML
Sbjct: 226 PAKP-RPESEWAAFETLRPTEAML 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,492,480
Number of extensions: 54502
Number of successful extensions: 303
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 3
Length of query: 566
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,193,720
Effective search space: 568210720
Effective search space used: 568210720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)