BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0002.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ...   224   2e-60
gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb...   159   1e-40

>gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  224 bits (572), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 124/140 (88%), Gaps = 3/140 (2%)

Query: 1   MGAETLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEHLKAHGEPQYEEAILAGPAS 60
           MGAE+LLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVE+LK+ GEP+Y E ILA P S
Sbjct: 379 MGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEILAPPIS 438

Query: 61  EEPQQGDMF--GEPGD-EADPLYDEAVAYVTRSRRASISSVQRQFRIGYNRAARLVEQME 117
           E+  Q DMF  GE GD EADPLYDEAVA+V ++RRASISSVQRQ RIGYNRAARLVEQME
Sbjct: 439 EDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAARLVEQME 498

Query: 118 AAGILSSMSKSGSRDVLAPP 137
            AG+LS+MS++GSRD+L PP
Sbjct: 499 TAGVLSAMSRNGSRDILVPP 518


>gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 780

 Score =  159 bits (401), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 4/140 (2%)

Query: 1   MGAETLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEHLKAHGEPQYEEAILAGPAS 60
           MGAETLLG GDML+ PPG+G P RVHGAFVSD+EVHRVVEHLK+ GEP Y E IL G   
Sbjct: 633 MGAETLLGMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQGEPNYIEGILEGGVL 692

Query: 61  EEPQQGDMFGEPGDEADP----LYDEAVAYVTRSRRASISSVQRQFRIGYNRAARLVEQM 116
           E+   G      G         +YD+AVA V + RRASIS VQR  RIGYNRAARL+EQM
Sbjct: 693 EDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHLRIGYNRAARLLEQM 752

Query: 117 EAAGILSSMSKSGSRDVLAP 136
           E +G++S+M  +G+R++L P
Sbjct: 753 EQSGLVSTMQSNGNREILVP 772


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 513,990
Number of extensions: 20619
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)