BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0067.0012.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314026|ref|YP_003778118.1| hypothetical protein Hsero_4749...   184   3e-48

>gi|300314026|ref|YP_003778118.1| hypothetical protein Hsero_4749
           [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  184 bits (466), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 103/125 (82%)

Query: 19  TARADTLKSEAEVRQLADKVMAAAGKGQTDDAYAAMTPYTLTDVNTLDRARLTARTSRMQ 78
           +A+ADTLK+EAEVR LADKVMA AG G+TDDAY  ++PY+L D+  L+ AR  AR+SRM 
Sbjct: 28  SAQADTLKTEAEVRALADKVMAEAGAGRTDDAYGLLSPYSLVDIRALENARTQARSSRMA 87

Query: 79  LEQTIGGSVGYEFIRSEKVGESLLKLVYIEKAEKQAIPWQFIFYKTASGWALSNFSNGDN 138
           +E  +G SVGYEFIRSEKVG+SLLKL YIEK E+QAIPW FIFYK  +GWA+S FSNG +
Sbjct: 88  IEALVGNSVGYEFIRSEKVGQSLLKLTYIEKTERQAIPWMFIFYKAPTGWAVSTFSNGAD 147

Query: 139 INSLF 143
           +++LF
Sbjct: 148 VDALF 152


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 319,337
Number of extensions: 10082
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)