BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0010.p (125 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 106 5e-25 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 105 8e-25 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 97 3e-22 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 96 6e-22 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 94 4e-21 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 106 bits (265), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 56/117 (47%), Positives = 81/117 (69%), Gaps = 1/117 (0%) Query: 1 LSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKMLFEKKKTALFITHD 60 LSGGMR+R ALA+TL +DP ++LMDEPFSALD QT+ +++ ++ + KKK LFITHD Sbjct: 139 LSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITHD 198 Query: 61 LVEAIALSDRLLVMSERPGTI-IEEIEVNLPFRDNPLERRKLPEIGPLQGRLMELLK 116 L EAIA+SDR++V++ PGT I E ++LP + E R P L ++ ++L+ Sbjct: 199 LDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFVELHQQIWDVLR 255 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 105 bits (263), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 56/115 (48%), Positives = 80/115 (69%), Gaps = 4/115 (3%) Query: 1 LSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKMLFEKKKTALFITHD 60 LSGGMRQR A+AR LA+D ++LMDEPF ALDA T+ LQ +L ++ E +KT +F+TH Sbjct: 141 LSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHS 200 Query: 61 LVEAIALSDRLLVMSERPGTIIEEIEVNLPFRDNPLERRKLPEIGPLQGRLMELL 115 + EAI L+DR++VM+ RPGT+ ++ VNLP +P + PE L+ L +L+ Sbjct: 201 IEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPAD----PEFNALKRELGQLV 251 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 97.1 bits (240), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 1/98 (1%) Query: 1 LSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKMLFEKKKTALFITHD 60 LSGGMRQRA +AR L +P V+LMDEPF ALDAQT+ VLQ +L ++ T +F+THD Sbjct: 134 LSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHD 193 Query: 61 LVEAIALSDRLLVMSERPGTIIEEI-EVNLPFRDNPLE 97 + EAI L+DR++ M+ P I+ I EV+LP +P + Sbjct: 194 IWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPAD 231 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 96.3 bits (238), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 65/90 (72%) Query: 1 LSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKMLFEKKKTALFITHD 60 LSGGMR+R ALA+T P++LLMDEPFSALD QT+ ++Q +L ++ + +F+THD Sbjct: 154 LSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHD 213 Query: 61 LVEAIALSDRLLVMSERPGTIIEEIEVNLP 90 L EAIAL+D++ V++ RP T+ ++LP Sbjct: 214 LEEAIALADKVYVLTARPATLKSVYPIDLP 243 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 94.0 bits (232), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 7/119 (5%) Query: 1 LSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKMLFEKKKTALFITHD 60 +SGGM+QR +AR LA++P+VLLMDEPF ALDA T+ LQ +L K++ + T + +THD Sbjct: 145 ISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHD 204 Query: 61 LVEAIALSDRLLVMSERPGTIIEEI-EVNLPFRDNPLERRKL---PEIGPLQGRLMELL 115 + EA+ LSDR+++M+ P I E+ EV L P +R L PE G + ++E L Sbjct: 205 VDEAVLLSDRIVMMTNGPAATIGEVLEVKLA---RPRDRVVLAQDPEYGQYRTAVLEFL 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 352,783 Number of extensions: 12151 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 59 Length of query: 125 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 50 Effective length of database: 1,264,745 Effective search space: 63237250 Effective search space used: 63237250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)