BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0007.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate A... 125 3e-30 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 105 3e-24 gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate A... 102 4e-23 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 100 8e-23 gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate A... 83 2e-17 >gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 125 bits (315), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 39 DLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAXRSPRAEAMLSPYILALQIAPKV 98 ++ +H IT E V F+ G + GLA+G+ L LSP A A+L PY+ A P+V Sbjct: 78 EIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTA------SAILDPYVKAANSMPRV 131 Query: 99 AFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFH 158 AP+F MW G I+ K+ +AV +VFF + NV ++ V P ++ R L A Q+ Sbjct: 132 ILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANARQLLR 191 Query: 159 LVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAICA 218 V SA +FS L + L+ +G VGE +G +G+GYL++ EG + VF I Sbjct: 192 TVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTFDINTVFAGIVV 251 Query: 219 LTLIGIVTYGAVVWAERRVLHYLPK 243 LT+ +V AV E+R++ + PK Sbjct: 252 LTIFALVLDLAVGVIEKRLMKWQPK 276 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 10/234 (4%) Query: 4 LAAWQWGPGWLGMPEYILPNLSHVLKESVVMWNNNDLLTHFGITAMEVVF-GFLFGALLG 62 L WQ+ + ++I P+ +L+ V + +T ++ V GF ++G Sbjct: 26 LGVWQFICSVWQVSDFIFPSPGSILQAMV---DYAGPITEHALSTFWVTMVGFAIAVVVG 82 Query: 63 LAVGVALGLSPRAXRSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLI 122 + +G +G SP A P + A PK AF P+ V+W G P I+ A LI Sbjct: 83 VTLGFVIG------SSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTAFLI 136 Query: 123 VFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVI 182 FFPIM+N+ + + T++P++ +++R L A R I V ++P F+ L++A TL+ + Sbjct: 137 SFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVAITLAFV 196 Query: 183 GVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERR 236 G TV E+ NQG+GYLLV F + + + + Y E+R Sbjct: 197 GSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKR 250 >gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 267 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 12/213 (5%) Query: 7 WQWGPGWLGMPEYILPNLSHVLKESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVG 66 WQ L +P Y++P + ++K W+ L+ +T F +LG+A+ Sbjct: 31 WQIVCTLLEVPPYLVPTPALIVKTLAADWSM--LMASLLVTLKITFLAFALAVVLGVAIA 88 Query: 67 VALGLSPRAXRSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFP 126 +S E L PY + LQ+ P VA APL ++W+ T + A ++ FP Sbjct: 89 FVF------VQSRFIEISLFPYAIILQVTPIVAIAPLIIIWVKDTTAALTVCATIMALFP 142 Query: 127 IMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTV 186 I+ N +R+V+P ++NL R A RWQ + SALP F GLRI+S L++IG V Sbjct: 143 IISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPYFFGGLRISSGLALIGAVV 202 Query: 187 GELVGGN----QGLGYLLVDGEGQGNTAAVFVA 215 E V G GL Y ++ Q N +F A Sbjct: 203 AEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAA 235 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 100 bits (250), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 16 MPEYILPNLSHVLKESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRA 75 +P +LP S + + +LL H + V GF+ G+ L +A+G+ +G+S RA Sbjct: 48 IPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRA 107 Query: 76 XRSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAI 135 EA+L P AL+ P +A+ PL ++WLG PK+++ + FFP+ +N+++ I Sbjct: 108 ------EALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGI 161 Query: 136 RTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQG 195 R +D ++ + T + + ++LP LF+GLR +L+ + + EL+ +G Sbjct: 162 RDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKG 221 Query: 196 LGYLLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERRVLHYLPKVHTST 248 +GYLL DG V AI L L+G ++ G + E++ L + S+ Sbjct: 222 VGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGWREARRQSS 274 >gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 284 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 9/233 (3%) Query: 11 PGWLGMPEYILPNLSHVLKESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALG 70 P + P I+ + + E + L T +T E V GFL G++ G+ G+ LG Sbjct: 59 PFFFSQPSLIVAQIYDWMVEGT---SQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLG 115 Query: 71 LSPRAXRSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMIN 130 R+ + S YI P+V +FV+ G + K+ +AV++VFF + N Sbjct: 116 ------RNKLLSDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFAN 169 Query: 131 VLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELV 190 +R D M+ + L A R Q+ V SAL + + L ++ +++G VGE + Sbjct: 170 AFQGVREADRYMIANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFL 229 Query: 191 GGNQGLGYLLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERRVLHYLPK 243 G QG+G L+ +G N + VF A+ L ++ + + ERR+L + P+ Sbjct: 230 GSKQGIGLLISTAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQ 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 759,081 Number of extensions: 29364 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 14 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)