BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0006.p (173 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 100 5e-23 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 97 7e-22 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 90 9e-20 gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 89 2e-19 gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 88 4e-19 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 100 bits (250), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 5/176 (2%) Query: 1 VQWLGGLDGLVNNAAITNSGGKATEQLAIEMWDKVMDVNVRGTWLMTNACLPALRECGRG 60 +Q G +D LVNNA IT T ++ +D+++DV++RGT M+ A LPA+R G Sbjct: 76 LQQFGRIDILVNNAGITQP--VKTLEITGADYDRILDVSLRGTLYMSQAVLPAMRAQQNG 133 Query: 61 SVVNLSSDTPLWGATNLLA--YVASKSAVIGMTRSLARELGGDNITVNAVAPGLTLVEAT 118 S++ +SS + G L Y A+K+ V+G+ R++ARE G + I VN++ PGL + Sbjct: 134 SIICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSITPGLIGTDII 193 Query: 119 E-YVPKERHQTYHDRRAIQRDQLPEDVCGAVIFALSDLSRFYTGQVMAVNGGFVMN 173 + + +E+ + + R +D+ GA +F SDLS++ TG + VNGG +++ Sbjct: 194 KGKLTEEKKAEIAETIPLARLGRADDIGGACVFLGSDLSQYCTGITLDVNGGMLIH 249 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 97.1 bits (240), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 5/176 (2%) Query: 1 VQWLGGLDGLVNNAAITNSGGKATEQLAIEMWDKVMDVNVRGTWLMTNACLPALRECGRG 60 ++ G +D LVNNA +T ++ + +D+++DV++RGT M+ A LPA++ G Sbjct: 76 LKQFGRIDILVNNAGVTQP--AKLLEITGKDYDRILDVSLRGTLYMSQAVLPAMQAQQSG 133 Query: 61 SVVNLSSDTPLWGATNLLA--YVASKSAVIGMTRSLARELGGDNITVNAVAPGLTLVEA- 117 S+V +SS + G L Y A+K+ V+G+ R++ARE G I VN + PGL + Sbjct: 134 SIVCISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLISTDIN 193 Query: 118 TEYVPKERHQTYHDRRAIQRDQLPEDVCGAVIFALSDLSRFYTGQVMAVNGGFVMN 173 + + E+ + R P+DV G +F SDLS++ TG + VNGG +++ Sbjct: 194 KDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGMLIH 249 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 90.1 bits (222), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 4 LGGLDGLVNNAAITNSGGKATEQLAIEM----WDKVMDVNVRGTWLMTNACLPALRECGR 59 G L LVNNA IT +QLA+ M WD V+ N+ ++ A L + + Sbjct: 84 FGSLSILVNNAGITQ------DQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKART 137 Query: 60 GSVVNLSSDTPLWGATNLLAYVASKSAVIGMTRSLARELGGDNITVNAVAPGLTLVEATE 119 G ++N++S G + Y A+K+ V GM+R+LARE+G NITVN VAPG + T Sbjct: 138 GRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTDMTR 197 Query: 120 YVPKERHQTYHDRRAIQRDQLPEDVCGAVIFALSDLSRFYTGQVMAVNGGFVM 172 + +++ + + R E++ AV F S + + TG + VNGG M Sbjct: 198 ALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGMYM 250 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 6/176 (3%) Query: 1 VQWLGGLDGLVNNA-AITNSGGKATEQLAIEMWDKVMDVNVRGTWLMTNACLPALRECGR 59 V +G +D L+NNA A+ E + E++D ++++N R T A +P +R G Sbjct: 79 VAQMGRIDVLINNAGALVKRA--PLETVTDELFDDIININARSVVAFTRAVIPVMRAQGG 136 Query: 60 GSVVNLSSDTPLWGA-TNLLAYVASKSAVIGMTRSLARELGGDNITVNAVAPGLTLVEAT 118 G+++N++S G L Y ASK V +TR +A+EL D I VNAVAPG+ + Sbjct: 137 GNIINVTSVAARHGGGPGALIYAASKGFVSTLTRGMAKELLADKIRVNAVAPGVIMTPFQ 196 Query: 119 E-YVPKERHQTYHDRRAIQRDQLPEDVCGAVIFALSD-LSRFYTGQVMAVNGGFVM 172 E + E+ + + + R P++ GA ++ S+ +S + TGQ++ VNGG M Sbjct: 197 ERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASEQMSGYVTGQIIDVNGGQYM 252 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 87.8 bits (216), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Query: 1 VQWLGGLDGLVNNAAITNSGGKATEQLAIEMWDKVMDVNVRGTWLMTNA-CLPALRECGR 59 V+ G G+V NA IT A + E WD V+ N+ G + + N +P +R Sbjct: 79 VEQHGCYYGVVCNAGITRD--NAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMPMVRRRAA 136 Query: 60 GSVVNLSSDTPLWGATNLLAYVASKSAVIGMTRSLARELGGDNITVNAVAPGLTLVEATE 119 G +V L+S + L G + Y A+K+ VIG T++LA EL +ITVN VAPGL + TE Sbjct: 137 GRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGLIDTDMTE 196 Query: 120 YVP-KERHQTYHDRRAIQRDQLPEDVCGAVIFALSDLSRFYTGQVMAVNGGF 170 P E + RRA + PE+V AV F +S + + T QV++VNGG Sbjct: 197 DAPIDEILKLIPARRAGK----PEEVAAAVAFLMSPDAAYITRQVISVNGGL 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 541,490 Number of extensions: 20100 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 38 Length of query: 173 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 94 Effective length of database: 1,245,805 Effective search space: 117105670 Effective search space used: 117105670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)