BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0003.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 106 2e-24 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 91 1e-19 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 84 1e-17 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 80 1e-16 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 79 3e-16 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 108/197 (54%), Gaps = 2/197 (1%) Query: 10 RGLRLLCEFSRQDKTLSAPELARRLDVPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAV 69 RGL ++ FS ++L+ +++++ +PR+ V R L TL+++G+ + + ++ L + Sbjct: 21 RGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVN--NFSLRPKI 78 Query: 70 LRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNV 129 L LG+ YL+S LT +P L+ + +G SC+L V D ++YVA+S + +N Sbjct: 79 LTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMSVALNT 138 Query: 130 GTRLPAHATVLGRVLLEDLTLAELRELYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYV 189 G+RLPA+ T LGR +L L +L+ + + L + T + L D++ + GY Sbjct: 139 GSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRANGYA 198 Query: 190 LQEGFFETSISTIAAPV 206 + + E + +IA PV Sbjct: 199 VIDEELEVGLRSIAVPV 215 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 2/199 (1%) Query: 10 RGLRLLCEFSRQDKTLSAPELARRLDVPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAV 69 +GL +L F+ Q +T++ ++A + +S+ R++ TLE +G++ ++ R Y+L V Sbjct: 19 KGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLTPKV 78 Query: 70 LRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNV 129 + +G+ YLA+ L ++ P L L + G + NL +VYVA+ V H+ + Sbjct: 79 MEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIHMPI 138 Query: 130 GTRLPAHATVLGRVLLEDLTLAELRELYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYV 189 G+R+P + T GR L L E + + V + +T V ++ ++ ++RG+ Sbjct: 139 GSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRERGFA 198 Query: 190 L-QEGFFETSISTIAAPVF 207 +E F +S IA+PVF Sbjct: 199 SNREELFLGDMS-IASPVF 216 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 2/200 (1%) Query: 10 RGLRLLCEFSRQDKTLSAPELARRLDVPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAV 69 +GL+++ F ++ L+ E+A+ + R+ R L TL +G++ ++ + + L V Sbjct: 28 KGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDN--KTFSLTPMV 85 Query: 70 LRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNV 129 LRLG YL S L I +PLL RL +G + + V D +V VA ++ + Sbjct: 86 LRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVSTTLQP 145 Query: 130 GTRLPAHATVLGRVLLEDLTLAELRELYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYV 189 GTR+PA+ T GR+LL +L A+L + E +++T V L + + +GY Sbjct: 146 GTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARARVQGYA 205 Query: 190 LQEGFFETSISTIAAPVFFF 209 L + E + T+A PV F Sbjct: 206 LVDQELELGLRTMAVPVRNF 225 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 2/197 (1%) Query: 10 RGLRLLCEFSRQDKTLSAPELARRLDVPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAV 69 +GL +L F ++ +++ ++A R + R+ R L TLE +G++ G+ + L V Sbjct: 35 KGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSE--GKTFALTPRV 92 Query: 70 LRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNV 129 L++G+ Y S L I +P L ++ + G + V DG +V++A++ + + Sbjct: 93 LKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIARNGATRVMTTGFVL 152 Query: 130 GTRLPAHATVLGRVLLEDLTLAELRELYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYV 189 G R+PA G V+L L ++R+ + F+ +T +L+ ++ +Q GY Sbjct: 153 GARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLYALIAQARQLGYA 212 Query: 190 LQEGFFETSISTIAAPV 206 + E +T + IA P+ Sbjct: 213 VVEQQLQTGVRGIAVPL 229 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 91/204 (44%), Gaps = 14/204 (6%) Query: 9 FRGLRLLCEFSRQDKTLSAPELARRLDVPRSTVFRLLTTLERMGFVERNDGGRDYRLGMA 68 +G ++ F LSA E+A R+ + RS R L TL G + G+ + L Sbjct: 21 MKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASD--GKKFWLMPR 78 Query: 69 VLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVN 128 +L LG YL S + P L RL ++ S N + DG IVYV + + Sbjct: 79 LLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVNAGFE 138 Query: 129 VGTRLPAHATVLGRVLL---EDLTLAELRE---LYPEEHLEVFSSNTPKTVVELFDMVQN 182 GTRLPA+ T GRVLL ED + E L P H+ + T K LF + Sbjct: 139 PGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAM----TDKAA--LFQEILT 192 Query: 183 DKQRGYVLQEGFFETSISTIAAPV 206 +++GY + E FE + IA V Sbjct: 193 MRRQGYGITENQFEMGMRGIAIAV 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.140 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 661,235 Number of extensions: 25992 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 7 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)