BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0163.p (347 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 117 1e-27 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 115 6e-27 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 115 7e-27 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 113 2e-26 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 113 2e-26 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/126 (50%), Positives = 85/126 (67%), Gaps = 3/126 (2%) Query: 1 MSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELCRIQRELGITMLYVTHD 60 +SGGQ+QRVALARA+ +EP++LLLDEPL+ LDAKLR +R++L ++ R LGIT +YVTHD Sbjct: 142 LSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHD 201 Query: 61 QEEALALSDRIVVMNGGKIEQLDIPENLFNAPRTRL-XPLSGAVETAQCILGDDGMA--T 117 Q EA+AL DRIVVM GKI Q+ P+ ++ P GA+ I+ D + T Sbjct: 202 QGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGIVAGDRLQLPT 261 Query: 118 TGEPLP 123 PLP Sbjct: 262 GTLPLP 267 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 52/96 (54%), Positives = 72/96 (75%) Query: 1 MSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELCRIQRELGITMLYVTHD 60 +SGGQ+QRVA+ RAI +P + L DEPLSNLDA LRV+MR E ++ +L TM+YVTHD Sbjct: 134 LSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYVTHD 193 Query: 61 QEEALALSDRIVVMNGGKIEQLDIPENLFNAPRTRL 96 Q EA+ L+D+IVV++ G+IEQ+ P+ L++ P R Sbjct: 194 QIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRF 229 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 55/94 (58%), Positives = 75/94 (79%) Query: 1 MSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELCRIQRELGITMLYVTHD 60 +SGGQQQRVA+ARA+V P+++LLDEPLSNLDAKLR + RA L + LG++ L VTHD Sbjct: 144 LSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHD 203 Query: 61 QEEALALSDRIVVMNGGKIEQLDIPENLFNAPRT 94 Q EA+A+SDRI+++N G+IEQ P++++ AP T Sbjct: 204 QGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNT 237 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 53/94 (56%), Positives = 71/94 (75%) Query: 1 MSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELCRIQRELGITMLYVTHD 60 +SGGQ+QRVA+ RAIV +P+L L DEPLSNLDA LRVQ R E+ ++ R+L T++YVTHD Sbjct: 135 LSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQLAATIVYVTHD 194 Query: 61 QEEALALSDRIVVMNGGKIEQLDIPENLFNAPRT 94 Q EA+ L D+IVVM+ G+I+Q P L+ P+ Sbjct: 195 QVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQN 228 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 50/92 (54%), Positives = 74/92 (80%) Query: 1 MSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELCRIQRELGITMLYVTHD 60 +SGGQ+QR+ALARA+ +EP++LLLDEP LDAK+R ++R L R+ EL +T ++VTHD Sbjct: 137 LSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHD 196 Query: 61 QEEALALSDRIVVMNGGKIEQLDIPENLFNAP 92 QEEAL ++D++V+MN G++EQ+ PE ++N P Sbjct: 197 QEEALEVADQVVLMNKGQVEQIGTPEAVYNHP 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,037,653 Number of extensions: 44004 Number of successful extensions: 341 Number of sequences better than 1.0e-08: 87 Number of HSP's gapped: 339 Number of HSP's successfully gapped: 90 Length of query: 347 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 261 Effective length of database: 1,212,660 Effective search space: 316504260 Effective search space used: 316504260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)