BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0154.p
         (400 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfam...   324   9e-90

>gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfamily
           II protein [Herbaspirillum seropedicae SmR1]
          Length = 855

 Score =  324 bits (830), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 187/218 (85%), Gaps = 3/218 (1%)

Query: 62  RRWRPQLMVWGLSATLGNLQQSKDALLGE---GRGVLVQGKTRKKIVVDTLIPAHPSRFA 118
           RRWRPQ++VWGLSATLGNL+QS  ALLG     +GVLV+G+ RK+I++DTL+P  P+RFA
Sbjct: 201 RRWRPQMVVWGLSATLGNLEQSLQALLGPDQAAQGVLVRGQQRKRILIDTLLPPQPARFA 260

Query: 119 WAGHLGLQMLPAVAAEIDGHASTLVFTNTRSQAELWYQNLLAARPDWAGLIALHHGSLDR 178
           WAGHLGLQMLP V AEID   STLVFTNTRSQAELWYQNLL ARPDWAGLIALHHGSLDR
Sbjct: 261 WAGHLGLQMLPGVVAEIDSSNSTLVFTNTRSQAELWYQNLLEARPDWAGLIALHHGSLDR 320

Query: 179 EVRDWVELAIKNGQLKAVVCTSSLDLGVDFAPVERVLQIGSARGVARLLQRAGRSGHSPG 238
           EVR+WVE  +++G+LKAVVCTSSLDLGVDF PVERVLQIGS RGVARLLQRAGRSGH+PG
Sbjct: 321 EVREWVEQGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHAPG 380

Query: 239 RVSRVTLVPTNTLELLEAAGARRARLPGRSRARRVPRS 276
           RVSR TLVPTN+LEL+EAA A+ A   G+   R VP +
Sbjct: 381 RVSRATLVPTNSLELVEAAAAQDAVAAGQVEQRPVPEA 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,168,914
Number of extensions: 45391
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,207,925
Effective search space: 378080525
Effective search space used: 378080525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)