BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0152.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312837|ref|YP_003776929.1| hypothetical protein Hsero_3542...   395   e-111

>gi|300312837|ref|YP_003776929.1| hypothetical protein Hsero_3542
           [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  395 bits (1015), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/361 (56%), Positives = 245/361 (67%), Gaps = 1/361 (0%)

Query: 12  ARAPRRYFATRSHALNFIRAVAPTKLVDGSWLYGTLAYWERPAFRPLILTYLEELGDGDP 71
           A APR+YF+ R+HALNF+  VAPTKLVDG+WLY  + +W  P FRPLILTYLEELGDG+ 
Sbjct: 104 AGAPRQYFSGRAHALNFLLRVAPTKLVDGAWLYSAVKHWRDPVFRPLILTYLEELGDGEV 163

Query: 72  AMNHVTLYQKLLAAHDCDDWQDLSDEHFVQGAIQLALGYQTERFLPEVIGYNLGYEQLPL 131
           AMNHV+LY+ LL AH C+    LS  H+VQGA+QLALG+  + F+PE+ G+NLGYEQLPL
Sbjct: 164 AMNHVSLYRSLLQAHGCEQADWLSQAHYVQGALQLALGWHGDEFIPEMFGFNLGYEQLPL 223

Query: 132 HLLISAYELNELGIDPYYFTLHVTIDNAATGHARKAAHAVADIAAQQDDPAGFYRRVRDG 191
           HLLI+AYELNELGIDPYYFTLHVTIDNAA+GHARKA  AV + AAQ  D   F +R+R G
Sbjct: 224 HLLITAYELNELGIDPYYFTLHVTIDNAASGHARKAVDAVLEAAAQWPDREEFLQRMRRG 283

Query: 192 YRLNDLGMDTASVIAGFDPERALIAVLQEKAAVGRNMHSDYCRFAGKTVNEWLDNPEDAG 251
           Y LN+LG  T  VI  FD ++ +  VL +KAA GR MHSDYCR  GKTVN+WL+ PE   
Sbjct: 284 YLLNELGASTLGVIGSFDLDQEVQRVLADKAAFGRMMHSDYCRIGGKTVNQWLERPEGMR 343

Query: 252 RFLHELERAGWIKRGSDPQESRFWRLISGAGAEMFGVFSPREQQLLYDWI-TRADGHGRG 310
            FL  +E+  WI RG     SRFWRLI   G EMFGVF+  E+Q++ +WI T  D   R 
Sbjct: 344 DFLAAMEQGKWILRGEPAGHSRFWRLIDAPGGEMFGVFNGYEKQVIREWIETGWDDAPRQ 403

Query: 311 MTFRAAARVRAAXRAGMHLVGADTATAASTNPATLIDALSPGSHHSVQGLQATRKFSAVL 370
            +FRA AR R            +  +        L+  LSP  HH   GL+ATR FS   
Sbjct: 404 PSFRAQARGRQGVAEQPEQPHQEAPSHLDAGLDALVAPLSPACHHLPPGLEATRLFSQCY 463

Query: 371 R 371
           R
Sbjct: 464 R 464


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,130,868
Number of extensions: 46751
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)