BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0149.p (203 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311761|ref|YP_003775853.1| GntR family transcription regul... 74 1e-14 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 71 7e-14 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 63 2e-11 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 54 6e-09 gi|300312737|ref|YP_003776829.1| transcription regulator protein... 54 9e-09 >gi|300311761|ref|YP_003775853.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 1/176 (0%) Query: 12 VLSLLRTDILSGKYQPGDKLRQDEVARRFEVSTTPVREAFRGLRSEGLVLIDANKGVVVK 71 + +LR I+ G+ G LRQD VA+ F+ S PVREAFR L +EGLVL +GV V Sbjct: 15 IAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVRVT 74 Query: 72 GLTVKDVAEIYELRIALEPLLAKKAVDSISPESLRAAHEIHADMCTSTDPHRWSALNREF 131 + V E E+R +LE L + + E + + HA + W A N F Sbjct: 75 MVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAAAGSLVEWDAANNLF 134 Query: 132 HLKLMMSEEDTRLYDIVKNLLVVAEPYVSLSIFIHPQILQADNDEHAMILEGYEKK 187 H L RL ++K L + Y+ + F ++D+D HA+I+E +++ Sbjct: 135 HDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHD-HALIIEALKER 189 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 70.9 bits (172), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 12 VLSLLRTDILSGKYQPGDKLRQDEVARRFEVSTTPVREAFRGLRSEGLVLIDANKGVVVK 71 V +LR ++ G+Y+PG +L+++ +AR VS TPVR A R L +GL DA +G+ V Sbjct: 8 VYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIHVA 67 Query: 72 GLTVKDVAEIYELRIALEPLLAKKAVDSISPES---LRAAHEIHADMCTSTDPH---RWS 125 + D+ E ++LR+ LEP A A + + LR ++E A S H + Sbjct: 68 AWSDWDIEETFQLRMLLEPYAASLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVEKIQ 127 Query: 126 ALNREFHLKLMMSEEDTRLYDIVKNLL 152 A N FH ++ RL +++ ++ Sbjct: 128 AANSIFHRTILEYSASPRLRAMLETII 154 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 4/167 (2%) Query: 20 ILSGKYQPGDKLRQDEVARRFEVSTTPVREAFRGLRSEGLVLIDANKGVVVKGLTVKDVA 79 I K PG L + +A F VS TP+REA L S G+V + +G +V + + + Sbjct: 19 IAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIGPQQLI 78 Query: 80 EIYELRIALEPLLAKKAVDSISP---ESLRAAHEIHADMCTSTDPHRWSALNREFHLKLM 136 E++E+ E + + A ++P L AAH+ + DP + LN FH + Sbjct: 79 EMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDANDPDAYFYLNEAFHDHIY 138 Query: 137 MSEEDTRLYDIVKNLLVVAEPYVSLSIFIHPQILQADNDEHAMILEG 183 + L D + L PY L + + + L++ DEH +++ Sbjct: 139 AGSHNGFLADQARALHRRLRPYRRLQLRVRDR-LKSSFDEHQAVVDA 184 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 54.3 bits (129), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 18/189 (9%) Query: 16 LRTDILSGKYQPGDKLRQDEVARRFEVSTTPVREAFRGLRSEGLVLIDANKGVVVKGLTV 75 L+ DI S + PGD + E+A+R VS TP+R+A L+ EG + + +G V + Sbjct: 17 LKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKVCPIDF 76 Query: 76 KDVAEIYELRIALEPLLAKKAVDSIS--PESLRAAHEIHADMCT-----STDPHRWSALN 128 + +Y+LRI LE A+D + PE+ +++A TD + + L+ Sbjct: 77 DRLDNLYDLRIVLE----MAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAVKVAQLD 132 Query: 129 REFHLKLMMS---EEDTRLYDIVKNLLVVAEPYVSLSIFIHPQILQADNDEHAMILEGYE 185 FH L+ + EE TR++ V + + V F+ + + A +EH IL+ Sbjct: 133 EAFHTNLVAAAGNEEMTRVHTEVTEKIRI----VRRLDFLKKKRIDATYEEHGKILQLIA 188 Query: 186 KKNGKRVAI 194 K+ I Sbjct: 189 KRKATEAQI 197 >gi|300312737|ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 53.9 bits (128), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 5/162 (3%) Query: 7 TIEQYVLSLLRTDILSGKYQPGDKLRQDEVARRFEVSTTPVREAFRGLRSEGLVLIDANK 66 T+ + V L I +G+ +PG KL +A S PVREA R L +EG + I N+ Sbjct: 19 TLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALEILPNR 78 Query: 67 GVVVKGLTVKDVAEIYELRIALEPLLAKKAVDSISPESLRAAHEIHADMCTSTDPHRWSA 126 + V +T E+ ++R+ALE L + A I L +H + R + Sbjct: 79 AMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARLHDTLSVEMKRKRPNV 138 Query: 127 -----LNREFHLKLMMSEEDTRLYDIVKNLLVVAEPYVSLSI 163 LN++ H L D++ L + P ++L + Sbjct: 139 DLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDL 180 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 583,526 Number of extensions: 21487 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 9 Length of query: 203 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 122 Effective length of database: 1,236,335 Effective search space: 150832870 Effective search space used: 150832870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)