BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0144.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 147 1e-36 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 120 9e-29 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 120 9e-29 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 112 4e-26 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 110 1e-25 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 13 AYMLQKDLLLPWRTILENAVLGIELQRPVTDADRTRALAMLARYGLESVANAYPHSLSGG 72 YM Q + L+PWR+ L+N + G++ + A LAR GL+ + YPH LSGG Sbjct: 83 GYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQWLARVGLQGFGDRYPHQLSGG 142 Query: 73 MKQRVALTRTLLSDPTVVLLDEPFSALDYETRLMLENDVISLTRTDRTSIILVTHDIDEA 132 M++RVAL +TL+ DP ++L+DEPFSALD +TR ++EN+V+ L + +++ +THD+DEA Sbjct: 143 MRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITHDLDEA 202 Query: 133 IAMSNRIVVLGGRPAKITREEHIVLSVEGDRDAVTARGAREFPVYHKEIWNALR 186 IAMS+R++VL P E + + RD R F H++IW+ LR Sbjct: 203 IAMSDRVIVLAAGPGTHPIGE-FRIDLPRPRDVAEIRMHPRFVELHQQIWDVLR 255 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 120 bits (301), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 86/142 (60%) Query: 15 MLQKDLLLPWRTILENAVLGIELQRPVTDADRTRALAMLARYGLESVANAYPHSLSGGMK 74 M Q++ L PW T+ +N L +E Q +A L L+ + YPH +SGGM+ Sbjct: 76 MFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMR 135 Query: 75 QRVALTRTLLSDPTVVLLDEPFSALDYETRLMLENDVISLTRTDRTSIILVTHDIDEAIA 134 QR AL R +S P +LLDEPF ALD TR+ L++ + L R +++LVTHD+DEA+ Sbjct: 136 QRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALF 195 Query: 135 MSNRIVVLGGRPAKITREEHIV 156 +++RI V RPAK+ +E ++V Sbjct: 196 LADRIFVFSPRPAKVLKEFNLV 217 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 120 bits (301), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 88/138 (63%) Query: 12 IAYMLQKDLLLPWRTILENAVLGIELQRPVTDADRTRALAMLARYGLESVANAYPHSLSG 71 I ++ Q D + PWR++ EN G + A + R GL+ + YPH LSG Sbjct: 97 IGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSG 156 Query: 72 GMKQRVALTRTLLSDPTVVLLDEPFSALDYETRLMLENDVISLTRTDRTSIILVTHDIDE 131 GM++RVAL +T ++ P ++L+DEPFSALD +TR +++++++ L S++ VTHD++E Sbjct: 157 GMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEE 216 Query: 132 AIAMSNRIVVLGGRPAKI 149 AIA+++++ VL RPA + Sbjct: 217 AIALADKVYVLTARPATL 234 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 112 bits (279), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 13 AYMLQKDLLLPWRTILENAVLGIELQRPVTDA-----DRTRALAMLARYGLESVANAYPH 67 A + Q LLPW + EN LG+E T+ DRTRA LA GL + N P+ Sbjct: 86 AVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRA--ALALVGLSAAENKRPN 143 Query: 68 SLSGGMKQRVALTRTLLSDPTVVLLDEPFSALDYETRLMLENDVISLTRTDRTSIILVTH 127 +SGGMKQRV + R L +P V+L+DEPF ALD TR L+++++ + +++++VTH Sbjct: 144 EISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTH 203 Query: 128 DIDEAIAMSNRIVVLGGRPAKITRE 152 D+DEA+ +S+RIV++ PA E Sbjct: 204 DVDEAVLLSDRIVMMTNGPAATIGE 228 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 110 bits (274), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 80/135 (59%) Query: 15 MLQKDLLLPWRTILENAVLGIELQRPVTDADRTRALAMLARYGLESVANAYPHSLSGGMK 74 + QKD LLPW+++ +N LG++ R RA +L GL+ A A P+ LSGGM+ Sbjct: 80 VFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGMR 139 Query: 75 QRVALTRTLLSDPTVVLLDEPFSALDYETRLMLENDVISLTRTDRTSIILVTHDIDEAIA 134 QRV L R L +P ++L+DEPF ALD TR ++ ++S+ + +TH I+EA+ Sbjct: 140 QRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEALF 199 Query: 135 MSNRIVVLGGRPAKI 149 + ++V+ RP +I Sbjct: 200 LGTEVIVMSPRPGRI 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 681,804 Number of extensions: 25018 Number of successful extensions: 285 Number of sequences better than 1.0e-08: 75 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 79 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)