BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0138.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie... 114 4e-27 gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphod... 100 9e-23 gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodie... 95 5e-21 gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodie... 92 3e-20 >gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 202 Score = 114 bits (286), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 102/196 (52%), Gaps = 6/196 (3%) Query: 2 NILHLSCSPRGQESESYRLSQKIISFLQSRTPALAVVRRNAAEGDVAHVDANYADVLGAA 61 +LH+ S R S S +L+ +S Q++ P VV R+ A + H+ + +LGA Sbjct: 3 TLLHIDSSARSGGSISRQLTASFVSQWQAKNPGGKVVHRDLAANALPHLSES---MLGAY 59 Query: 62 REPA-GFSVEGS--ISRSEQLICELEQADAVLISTPMHNLTVPSALKAWIDHVVRIRRTF 118 PA S E + I +S+ L+ EL AD ++I PM+N PS LKAWIDHV R RTF Sbjct: 60 FTPADARSAEQAEVIKQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTF 119 Query: 119 DVTPQGKIGTLRDRPVYIAVSSGGVYSGERARQPDFLTTYLKTILASIGLHDLHFFSVQG 178 T G +G + + I +S GG+YS DF YLK+ L IG+ D+ +G Sbjct: 120 KYTETGPVGLVTGKKAVIILSRGGMYSEGPMEALDFQGKYLKSALGFIGITDVELVVAEG 179 Query: 179 TAFGPHALAQARADAD 194 + G A QA A A+ Sbjct: 180 VSMGEEAAKQAVASAE 195 >gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 100 bits (249), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 6/185 (3%) Query: 1 MNILHLSCSPRGQESESYRLSQKIISFLQSRTPALAVVRRNAAEGDVAHVDANYADVLGA 60 M +LHL S G+ S S +LS I++ L+S P L V+ R+ A H+ A + G Sbjct: 1 MKLLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAFGG 60 Query: 61 AR--EPAGFSVEGSISRSEQLICELEQADAVLISTPMHNLTVPSALKAWIDHVVRIRRTF 118 A +PA + ++ + + EL QAD ++I PM+N ++PS LKAWID V TF Sbjct: 61 AEVDDPA---LRADLALGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTF 117 Query: 119 DVTPQGKIGTLRDRPVYIAVSSGGVYS-GERARQPDFLTTYLKTILASIGLHDLHFFSVQ 177 T G G L+ R YIA GG Y+ G D YL+ +L +G+ D+ + Sbjct: 118 AYTDAGPEGLLKGRRAYIASVRGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAE 177 Query: 178 GTAFG 182 G A G Sbjct: 178 GVAMG 182 >gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 205 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 1/197 (0%) Query: 2 NILHLSCSPRGQESESYRLSQKIISFLQSRTPALAVVRRNAAEGDVAHVDANYADVLGAA 61 ++L ++ SPRG +S S R + +I +++ + VR A+ + H+ + Y A Sbjct: 3 HVLLITSSPRGADSLSSRFATEIAEGIKASSAGTLKVRDLIAD-PLPHITSAYIQGRLTA 61 Query: 62 REPAGFSVEGSISRSEQLICELEQADAVLISTPMHNLTVPSALKAWIDHVVRIRRTFDVT 121 E +++ +++L+ EL+ AD V+I + M N S LKAW DHV TF Sbjct: 62 PENRTPDQVAAVALAQELVDELKAADIVVIGSGMINFGPSSQLKAWFDHVTWPSVTFAYD 121 Query: 122 PQGKIGTLRDRPVYIAVSSGGVYSGERARQPDFLTTYLKTILASIGLHDLHFFSVQGTAF 181 G G L + Y+ ++GGV+S DF + YL +L+ IGL D+ V+GT F Sbjct: 122 DNGPKGLLTGKKTYLVAAAGGVFSEGIWAAFDFQSNYLLHLLSFIGLSDVEMVCVEGTVF 181 Query: 182 GPHALAQARADADQALR 198 GP A A A+ + A++ Sbjct: 182 GPDAAKAAIANTEAAVQ 198 >gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 7/177 (3%) Query: 1 MNILHLSCSPRGQESESYRLSQKIISFLQSRTPALAVVRRNAAEGDVAHVDANYADVLGA 60 M ILHL S + S S LS ++ L+ P V R+ A +AH+D A Sbjct: 1 MKILHLDSSILAEASASRVLSAAVVEELRILHPTAQVSVRDLAAAPIAHLDGPIA---AG 57 Query: 61 AREP----AGFSVEGSISRSEQLICELEQADAVLISTPMHNLTVPSALKAWIDHVVRIRR 116 R+P A V + SE L+ + +D +++ PM+N ++PS LKAW+D V + R Sbjct: 58 FRQPGANHASPEVRAEQALSETLVSQFLNSDVIVLGVPMYNFSIPSQLKAWLDRVAQPGR 117 Query: 117 TFDVTPQGKIGTLRDRPVYIAVSSGGVYSGERARQPDFLTTYLKTILASIGLHDLHF 173 TF T G +G ++ V IA + GG+YS A D YLK +G+ + F Sbjct: 118 TFRYTENGPLGLSGEKAVIIASTRGGMYSSGPAAVMDHQEAYLKAFFGFLGIERVRF 174 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 578,317 Number of extensions: 22782 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 4 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)